Controlled ribonucleotide tailing of cDNA ends (CRTC) by terminal deoxynucleotidyl transferase: a new approach in PCR-mediated analysis of mRNA sequences

Nucleic Acids Res. 1996 May 1;24(9):1789-91. doi: 10.1093/nar/24.9.1789.

Abstract

Controlled ribonucleotide tailing of cDNA ends (CRTC) by terminal deoxynucleotidyl transferase is a polymerase chain reaction (PCR)-mediated technique that was developed to facilitate cloning and direct sequence analysis of complete 5'-terminal unknown coding regions of rare RNA molecules. In contrast with standard tailing protocols using dNTPs as the substrate, ribo-tailing of cDNA ends is easily controllable, self-limited (from two to four rNMP incorporations) and highly efficient (>98%). By virtue of the homopolymeric ribo-tail, the modified cDNA is anchored to the 3' overhang of a double-stranded DNA-adaptor in a T4 DNA ligase-dependent ligation. PCR amplification, mediated by two sequence-specific primers, yields the desired unique product suitable for cloning and dideoxy-sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cloning, Molecular / methods*
  • DNA Ligases / metabolism
  • DNA Nucleotidylexotransferase / metabolism*
  • DNA, Complementary / genetics*
  • Guanosine Monophosphate
  • Molecular Sequence Data
  • Polymerase Chain Reaction / methods
  • RNA, Messenger / genetics*
  • Sequence Analysis, DNA / methods*

Substances

  • DNA, Complementary
  • RNA, Messenger
  • Guanosine Monophosphate
  • DNA Nucleotidylexotransferase
  • DNA Ligases