oriGNAI3: a narrow zone of preferential replication initiation in mammalian cells identified by 2D gel and competitive PCR replicon mapping techniques

Nucleic Acids Res. 1998 May 15;26(10):2313-21. doi: 10.1093/nar/26.10.2313.

Abstract

The nature of mammalian origins of DNA replication remains controversial and this is primarily because two-dimensional gel replicon mapping techniques have identified broad zones of replication initiation whereas several other techniques, such as quantitative PCR, have disclosed more discrete sites of initiation at the same chromosomal loci. In this report we analyze the replication of an amplified genomic region encompassing the 3'-end of the GNAI3 gene, the entire GNAT2 gene and the intergenic region between them in exponentially growing Chinese hamster fibroblasts. These cells express GNAI3 but not GNAT2 . The replication pattern was first analyzed by two-dimensional neutral-alkaline gel electrophoresis. Surprisingly, the results revealed a small preferential zone of replication initiation, of at most 1.7 kb, located in a limited part of the GNAI3 - GNAT2 intergenic region. Mapping of this initiation zone was then confirmed by quantitative PCR. The agreement between the two techniques exploited here strengthens the hypothesis that preferred sites of replication initiation do exist in mammalian genomes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AMP Deaminase / genetics
  • Animals
  • CHO Cells
  • Chromosome Mapping
  • Cricetinae
  • DNA Replication / genetics*
  • Electrophoresis, Gel, Two-Dimensional / methods*
  • GTP-Binding Proteins / genetics*
  • Molecular Sequence Data
  • Polymerase Chain Reaction / methods*
  • Replication Origin / genetics*
  • Replicon

Substances

  • AMP Deaminase
  • GTP-Binding Proteins

Associated data

  • GENBANK/Y08232