The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism

Biochemistry. 1998 Jun 2;37(22):7913-8. doi: 10.1021/bi980179e.

Abstract

The X-ray structure of the porcine odorant binding protein (OBPp) was determined at 2.25 A resolution. This lipocalin is a monomer and is devoid of naturally occurring bound ligand, contrary to what was observed in the case of bovine OBP [Tegoni, M., et al. (1996) Nat. Struct. Biol. 3, 863-867; Bianchet, M. A., et al. (1996) Nat. Struct. Biol. 3, 934-939]. In this latter protein, a dimer without any disulfide bridges, domain swapping was found to occur between the beta- and alpha-domains. A single Gly (121) insertion was found in OBPp when it was compared to OBPb, which may prevent domain swapping from taking place. The presence of a disulfide bridge between the OBPp beta- and alpha-domains (cysteines 63 and 155) may lock the resulting fold in a nonswapped monomeric conformation. Comparisons with other OBPs indicate that the two cysteines involved in the OBPp disulfide bridge are conserved in the sequence, suggesting that OBPp may be considered a prototypic OBP fold, and not OBPb.

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Crystallography, X-Ray
  • Dimerization
  • Glycine / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Nasal Mucosa / chemistry
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Receptors, Odorant / chemistry*
  • Receptors, Odorant / metabolism
  • Structure-Activity Relationship
  • Swine

Substances

  • Receptors, Odorant
  • odorant-binding protein
  • Glycine

Associated data

  • PDB/1A3Y