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Page 1
Comprehensive genome sequence analysis of a breast cancer amplicon.
Collins C, Volik S, Kowbel D, Ginzinger D, Ylstra B, Cloutier T, Hawkins T, Predki P, Martin C, Wernick M, Kuo WL, Alberts A, Gray JW. Collins C, et al. Among authors: ylstra b. Genome Res. 2001 Jun;11(6):1034-42. doi: 10.1101/gr.gr1743r. Genome Res. 2001. PMID: 11381030 Free PMC article.
Breast tumor copy number aberration phenotypes and genomic instability.
Fridlyand J, Snijders AM, Ylstra B, Li H, Olshen A, Segraves R, Dairkee S, Tokuyasu T, Ljung BM, Jain AN, McLennan J, Ziegler J, Chin K, Devries S, Feiler H, Gray JW, Waldman F, Pinkel D, Albertson DG. Fridlyand J, et al. Among authors: ylstra b. BMC Cancer. 2006 Apr 18;6:96. doi: 10.1186/1471-2407-6-96. BMC Cancer. 2006. PMID: 16620391 Free PMC article.
DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.
Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel D, Albertson DG, Ylstra B. Scheinin I, et al. Among authors: ylstra b. Genome Res. 2014 Dec;24(12):2022-32. doi: 10.1101/gr.175141.114. Epub 2014 Sep 18. Genome Res. 2014. PMID: 25236618 Free PMC article.
Assembly of microarrays for genome-wide measurement of DNA copy number.
Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG. Snijders AM, et al. Among authors: ylstra b. Nat Genet. 2001 Nov;29(3):263-4. doi: 10.1038/ng754. Nat Genet. 2001. PMID: 11687795
Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers.
Benz CC, Fedele V, Xu F, Ylstra B, Ginzinger D, Yu M, Moore D, Hall RK, Wolff DJ, Disis ML, Eppenberger-Castori S, Eppenberger U, Schittulli F, Tommasi S, Paradiso A, Scott GK, Albertson DG. Benz CC, et al. Among authors: ylstra b. Genes Chromosomes Cancer. 2006 Nov;45(11):983-94. doi: 10.1002/gcc.20364. Genes Chromosomes Cancer. 2006. PMID: 16883574
CopywriteR: DNA copy number detection from off-target sequence data.
Kuilman T, Velds A, Kemper K, Ranzani M, Bombardelli L, Hoogstraat M, Nevedomskaya E, Xu G, de Ruiter J, Lolkema MP, Ylstra B, Jonkers J, Rottenberg S, Wessels LF, Adams DJ, Peeper DS, Krijgsman O. Kuilman T, et al. Among authors: ylstra b. Genome Biol. 2015 Feb 27;16(1):49. doi: 10.1186/s13059-015-0617-1. Genome Biol. 2015. PMID: 25887352 Free PMC article.
249 results