Cooke KM - Search Results

1

Use of capillary gas chromatography with negative ion-chemical ionization mass spectrometry for the determination of perfluorocarbon tracers in the atmosphere.

Cooke KM, Simmonds TPG, Nickless G, Makepeace AP. Cooke KM, et al. Anal Chem. 2001 Sep 1;73(17):4295-300. doi: 10.1021/ac001253d. Anal Chem. 2001. PMID: 11569822

2

Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme.

Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Yi EC, et al. Proteomics. 2005 Feb;5(2):380-7. doi: 10.1002/pmic.200400970. Proteomics. 2005. PMID: 15648049

3

Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape.

Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA. Chen R, et al. Gastroenterology. 2005 Oct;129(4):1187-97. doi: 10.1053/j.gastro.2005.08.001. Gastroenterology. 2005. PMID: 16230073

4

Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer.

Chen R, Brentnall TA, Pan S, Cooke K, Moyes KW, Lane Z, Crispin DA, Goodlett DR, Aebersold R, Bronner MP. Chen R, et al. Mol Cell Proteomics. 2007 Aug;6(8):1331-42. doi: 10.1074/mcp.M700072-MCP200. Epub 2007 May 12. Mol Cell Proteomics. 2007. PMID: 17496331 Free article.

5

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.

Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B. Prakash A, et al. Mol Cell Proteomics. 2007 Oct;6(10):1741-8. doi: 10.1074/mcp.M600470-MCP200. Epub 2007 Jul 7. Mol Cell Proteomics. 2007. PMID: 17617667 Free article.

6

Proteins That Underlie Neoplastic Progression of Ulcerative Colitis.

Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, Jebailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Brentnall TA, et al. Proteomics Clin Appl. 2009 Sep 14;3(11):1326. doi: 10.1002/prca.200900061. Proteomics Clin Appl. 2009. PMID: 20098637 Free PMC article.

7

UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.

Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R. Zhang H, et al. Genome Biol. 2006;7(8):R73. doi: 10.1186/gb-2006-7-8-R73. Epub 2006 Aug 10. Genome Biol. 2006. PMID: 16901351 Free PMC article.

8

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD. Brusniak MY, et al. BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542. BMC Bioinformatics. 2008. PMID: 19087345 Free PMC article.

9

Quantitative proteomics investigation of pancreatic intraepithelial neoplasia.

Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR, McIntosh MW, Traverso W, Aebersold R, Brentnall TA. Pan S, et al. Electrophoresis. 2009 Apr;30(7):1132-44. doi: 10.1002/elps.200800752. Electrophoresis. 2009. PMID: 19373808 Free PMC article.

10

Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis.

Chen R, Pan S, Cooke K, Moyes KW, Bronner MP, Goodlett DR, Aebersold R, Brentnall TA. Chen R, et al. Pancreas. 2007 Jan;34(1):70-9. doi: 10.1097/01.mpa.0000240615.20474.fd. Pancreas. 2007. PMID: 17198186 Free PMC article.

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