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Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma.
Meerzaman DM, Yan C, Chen QR, Edmonson MN, Schaefer CF, Clifford RJ, Dunn BK, Dong L, Finney RP, Cultraro CM, Hu Y, Yang Z, Nguyen CV, Kelley JM, Cai S, Zhang H, Zhang J, Wilson R, Messmer L, Chung YH, Kim JA, Park NH, Lyu MS, Song IH, Komatsoulis G, Buetow KH. Meerzaman DM, et al. Among authors: schaefer cf. Cancer Genomics Proteomics. 2014 Jan-Feb;11(1):1-12. Cancer Genomics Proteomics. 2014. PMID: 24633315
The PathOlogist: an automated tool for pathway-centric analysis.
Greenblum SI, Efroni S, Schaefer CF, Buetow KH. Greenblum SI, et al. Among authors: schaefer cf. BMC Bioinformatics. 2011 May 4;12:133. doi: 10.1186/1471-2105-12-133. BMC Bioinformatics. 2011. PMID: 21542931 Free PMC article.
The completion of the Mammalian Gene Collection (MGC).
MGC Project Team; Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH, Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Ha… See abstract for full author list ➔ MGC Project Team, et al. Among authors: schaefer cf. Genome Res. 2009 Dec;19(12):2324-33. doi: 10.1101/gr.095976.109. Epub 2009 Sep 18. Genome Res. 2009. PMID: 19767417 Free PMC article.
Identification of microbial DNA in human cancer.
Duncan CG, Leary RJ, Lin JC, Cummins J, Di C, Schaefer CF, Wang TL, Riggins GJ, Edwards J, Bigner D, Kopelovich L, Vogelstein B, Kinzler KW, Velculescu VE, Yan H. Duncan CG, et al. Among authors: schaefer cf. BMC Med Genomics. 2009 May 8;2:22. doi: 10.1186/1755-8794-2-22. BMC Med Genomics. 2009. PMID: 19426505 Free PMC article.
PID: the Pathway Interaction Database.
Schaefer CF, Anthony K, Krupa S, Buchoff J, Day M, Hannay T, Buetow KH. Schaefer CF, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D674-9. doi: 10.1093/nar/gkn653. Epub 2008 Oct 2. Nucleic Acids Res. 2009. PMID: 18832364 Free PMC article.
57 results