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Whole-genome shotgun assembly and comparison of human genome assemblies.
Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, Hannenhalli S, Turner R, Yooseph S, Lu F, Nusskern DR, Shue BC, Zheng XH, Zhong F, Delcher AL, Huson DH, Kravitz SA, Mouchard L, Reinert K, Remington KA, Clark AG, Waterman MS, Eichler EE, Adams MD, Hunkapiller MW, Myers EW, Venter JC. Istrail S, et al. Among authors: waterman ms. Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):1916-21. doi: 10.1073/pnas.0307971100. Epub 2004 Feb 9. Proc Natl Acad Sci U S A. 2004. PMID: 14769938 Free PMC article.
Haplotype reconstruction from SNP alignment.
Li LM, Kim JH, Waterman MS. Li LM, et al. Among authors: waterman ms. J Comput Biol. 2004;11(2-3):505-16. doi: 10.1089/1066527041410454. J Comput Biol. 2004. PMID: 15285905
A quantile method for sizing optical maps.
Li H, Valouev A, Schwartz DC, Waterman MS, Li LM. Li H, et al. Among authors: waterman ms. J Comput Biol. 2007 Apr;14(3):255-66. doi: 10.1089/cmb.2006.0006. J Comput Biol. 2007. PMID: 17563310
Alignment of optical maps.
Valouev A, Li L, Liu YC, Schwartz DC, Yang Y, Zhang Y, Waterman MS. Valouev A, et al. J Comput Biol. 2006 Mar;13(2):442-62. doi: 10.1089/cmb.2006.13.442. J Comput Biol. 2006. PMID: 16597251
Whither computational biology.
Davison DB, Kingsbury DT, Marr TG, Waterman MS. Davison DB, et al. Among authors: waterman ms. J Comput Biol. 1994 Spring;1(1):1-2. doi: 10.1089/cmb.1994.1.1. J Comput Biol. 1994. PMID: 8790448 No abstract available.
A new algorithm for DNA sequence assembly.
Idury RM, Waterman MS. Idury RM, et al. Among authors: waterman ms. J Comput Biol. 1995 Summer;2(2):291-306. doi: 10.1089/cmb.1995.2.291. J Comput Biol. 1995. PMID: 7497130
689 results