Régnier M - Search Results

1

Automatic RNA secondary structure prediction with a comparative approach.

Tahi F, Gouy M, Régnier M. Tahi F, et al. Among authors: regnier m. Comput Chem. 2002 Jul;26(5):521-30. doi: 10.1016/s0097-8485(02)00012-8. Comput Chem. 2002. PMID: 12144180

2

Counting RNA pseudoknotted structures.

Saule C, Régnier M, Steyaert JM, Denise A. Saule C, et al. Among authors: regnier m. J Comput Biol. 2011 Oct;18(10):1339-51. doi: 10.1089/cmb.2010.0086. Epub 2011 May 6. J Comput Biol. 2011. PMID: 21548808 Free PMC article.

3

IPANEMAP: integrative probing analysis of nucleic acids empowered by multiple accessibility profiles.

Saaidi A, Allouche D, Regnier M, Sargueil B, Ponty Y. Saaidi A, et al. Among authors: regnier m. Nucleic Acids Res. 2020 Sep 4;48(15):8276-8289. doi: 10.1093/nar/gkaa607. Nucleic Acids Res. 2020. PMID: 32735675 Free PMC article.

4

Comparison of statistical significance criteria.

Régnier M, Vandenbogaert M. Régnier M, et al. J Bioinform Comput Biol. 2006 Apr;4(2):537-51. doi: 10.1142/s0219720006002028. J Bioinform Comput Biol. 2006. PMID: 16819801

5

High-throughput sequencing reveals circular substrates for an archaeal RNA ligase.

Becker HF, Héliou A, Djaout K, Lestini R, Regnier M, Myllykallio H. Becker HF, et al. Among authors: regnier m. RNA Biol. 2017 Aug 3;14(8):1075-1085. doi: 10.1080/15476286.2017.1302640. Epub 2017 Mar 9. RNA Biol. 2017. PMID: 28277897 Free PMC article.

6

Analysis of pattern overlaps and exact computation of P-values of pattern occurrences numbers: case of Hidden Markov Models.

Régnier M, Furletova E, Yakovlev V, Roytberg M. Régnier M, et al. Algorithms Mol Biol. 2014 Dec 16;9(1):25. doi: 10.1186/s13015-014-0025-1. eCollection 2014. Algorithms Mol Biol. 2014. PMID: 25648087 Free PMC article.

7

Assessing computational tools for the discovery of transcription factor binding sites.

Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. Tompa M, et al. Among authors: regnier m. Nat Biotechnol. 2005 Jan;23(1):137-44. doi: 10.1038/nbt1053. Nat Biotechnol. 2005. PMID: 15637633 Free article.

8

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.

Boeva V, Regnier M, Papatsenko D, Makeev V. Boeva V, et al. Among authors: regnier m. Bioinformatics. 2006 Mar 15;22(6):676-84. doi: 10.1093/bioinformatics/btk032. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403795

9

Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.

Papatsenko DA, Makeev VJ, Lifanov AP, Régnier M, Nazina AG, Desplan C. Papatsenko DA, et al. Among authors: regnier m. Genome Res. 2002 Mar;12(3):470-81. doi: 10.1101/gr.212502. Genome Res. 2002. PMID: 11875036 Free PMC article.

10

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules.

Boeva V, Clément J, Régnier M, Roytberg MA, Makeev VJ. Boeva V, et al. Among authors: regnier m. Algorithms Mol Biol. 2007 Oct 10;2:13. doi: 10.1186/1748-7188-2-13. Algorithms Mol Biol. 2007. PMID: 17927813 Free PMC article.

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