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A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
Garcia BJ, Simha R, Garvin M, Furches A, Jones P, Gazolla JGFM, Hyatt PD, Schadt CW, Pelletier D, Jacobson D. Garcia BJ, et al. Among authors: hyatt pd. Comput Struct Biotechnol J. 2021 Oct 25;19:5911-5919. doi: 10.1016/j.csbj.2021.10.029. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849195 Free PMC article.
Defining the genetic components of callus formation: A GWAS approach.
Tuskan GA, Mewalal R, Gunter LE, Palla KJ, Carter K, Jacobson DA, Jones PC, Garcia BJ, Weighill DA, Hyatt PD, Yang Y, Zhang J, Reis N, Chen JG, Muchero W. Tuskan GA, et al. Among authors: hyatt pd. PLoS One. 2018 Aug 17;13(8):e0202519. doi: 10.1371/journal.pone.0202519. eCollection 2018. PLoS One. 2018. PMID: 30118526 Free PMC article.
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N, Rokhsar DS. Dehal P, et al. Among authors: hyatt pd. Science. 2002 Dec 13;298(5601):2157-67. doi: 10.1126/science.1080049. Science. 2002. PMID: 12481130