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115 results

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Page 1
Discovery of functional noncoding elements by digital analysis of chromatin structure.
Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO, McArthur M, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: hawrylycz m. Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42. doi: 10.1073/pnas.0407387101. Epub 2004 Nov 18. Proc Natl Acad Sci U S A. 2004. PMID: 15550541 Free PMC article.
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: hawrylycz m. Nat Methods. 2006 Jul;3(7):511-8. doi: 10.1038/nmeth890. Nat Methods. 2006. PMID: 16791208
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium; Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP… See abstract for full author list ➔ ENCODE Project Consortium, et al. Among authors: hawrylycz m. Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874. Nature. 2007. PMID: 17571346 Free PMC article.
Divergent and nonuniform gene expression patterns in mouse brain.
Morris JA, Royall JJ, Bertagnolli D, Boe AF, Burnell JJ, Byrnes EJ, Copeland C, Desta T, Fischer SR, Goldy J, Glattfelder KJ, Kidney JM, Lemon T, Orta GJ, Parry SE, Pathak SD, Pearson OC, Reding M, Shapouri S, Smith KA, Soden C, Solan BM, Weller J, Takahashi JS, Overly CC, Lein ES, Hawrylycz MJ, Hohmann JG, Jones AR. Morris JA, et al. Among authors: hawrylycz mj. Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19049-54. doi: 10.1073/pnas.1003732107. Epub 2010 Oct 18. Proc Natl Acad Sci U S A. 2010. PMID: 20956311 Free PMC article.
Transcriptional network orchestrating regional patterning of cortical progenitors.
Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL. Ypsilanti AR, et al. Among authors: hawrylycz m. Proc Natl Acad Sci U S A. 2021 Dec 21;118(51):e2024795118. doi: 10.1073/pnas.2024795118. Proc Natl Acad Sci U S A. 2021. PMID: 34921112 Free PMC article.
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia.
Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. Su-Feher L, et al. Proc Natl Acad Sci U S A. 2022 Apr 12;119(15):e2108760119. doi: 10.1073/pnas.2108760119. Epub 2022 Apr 4. Proc Natl Acad Sci U S A. 2022. PMID: 35377797 Free PMC article.
Cell-type-based model explaining coexpression patterns of genes in the brain.
Grange P, Bohland JW, Okaty BW, Sugino K, Bokil H, Nelson SB, Ng L, Hawrylycz M, Mitra PP. Grange P, et al. Among authors: hawrylycz m. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5397-402. doi: 10.1073/pnas.1312098111. Epub 2014 Mar 25. Proc Natl Acad Sci U S A. 2014. PMID: 24706869 Free PMC article.
115 results