Jeffery I - Search Results

1

Oligonucleotide microarray analysis of gene expression in neuroblastoma displaying loss of chromosome 11q.

McArdle L, McDermott M, Purcell R, Grehan D, O'Meara A, Breatnach F, Catchpoole D, Culhane AC, Jeffery I, Gallagher WM, Stallings RL. McArdle L, et al. Among authors: jeffery i. Carcinogenesis. 2004 Sep;25(9):1599-609. doi: 10.1093/carcin/bgh173. Epub 2004 Apr 16. Carcinogenesis. 2004. PMID: 15090470 Review.

2

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC. Jeffery IB, et al. BMC Bioinformatics. 2006 Jul 26;7:359. doi: 10.1186/1471-2105-7-359. BMC Bioinformatics. 2006. PMID: 16872483 Free PMC article.

3

Integrating transcription factor binding site information with gene expression datasets.

Jeffery IB, Madden SF, McGettigan PA, Perrière G, Culhane AC, Higgins DG. Jeffery IB, et al. Bioinformatics. 2007 Feb 1;23(3):298-305. doi: 10.1093/bioinformatics/btl597. Epub 2006 Nov 24. Bioinformatics. 2007. PMID: 17127681

4

Detecting microRNA activity from gene expression data.

Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG. Madden SF, et al. BMC Bioinformatics. 2010 May 18;11:257. doi: 10.1186/1471-2105-11-257. BMC Bioinformatics. 2010. PMID: 20482775 Free PMC article.

5

Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data.

Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG. Yin J, et al. BMC Genomics. 2010 Jan 20;11:50. doi: 10.1186/1471-2164-11-50. BMC Genomics. 2010. PMID: 20089164 Free PMC article.

6

MyD88 is an essential component of retinoic acid-induced differentiation in human pluripotent embryonal carcinoma cells.

Sulaiman G, Cooke A, Ffrench B, Gasch C, Abdullai OA, O'Connor K, Elbaruni S, Blackshields G, Spillane C, Keegan H, McEneaney V, Knittel R, Rogers A, Jeffery IB, Doyle B, Bates M, d'Adhemar C, Lee MY, Campbell EL, Moynagh PN, Higgins DG, O'Toole S, O'Neill L, O'Leary JJ, Gallagher MF. Sulaiman G, et al. Cell Death Differ. 2017 Nov;24(11):1975-1986. doi: 10.1038/cdd.2017.124. Epub 2017 Sep 8. Cell Death Differ. 2017. PMID: 28885616 Free PMC article.

7

IPCO: Inference of Pathways from Co-variance analysis.

Das M, Ghosh TS, Jeffery IB. Das M, et al. BMC Bioinformatics. 2020 Feb 18;21(1):62. doi: 10.1186/s12859-020-3404-2. BMC Bioinformatics. 2020. PMID: 32070271 Free PMC article.

8

SPINGO: a rapid species-classifier for microbial amplicon sequences.

Allard G, Ryan FJ, Jeffery IB, Claesson MJ. Allard G, et al. BMC Bioinformatics. 2015 Oct 8;16:324. doi: 10.1186/s12859-015-0747-1. BMC Bioinformatics. 2015. PMID: 26450747 Free PMC article.

9

Dynamic 5-HT2C receptor editing in a mouse model of obesity.

Schellekens H, Clarke G, Jeffery IB, Dinan TG, Cryan JF. Schellekens H, et al. PLoS One. 2012;7(3):e32266. doi: 10.1371/journal.pone.0032266. Epub 2012 Mar 20. PLoS One. 2012. PMID: 22448217 Free PMC article.

10

Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans.

Neville BA, Sheridan PO, Harris HM, Coughlan S, Flint HJ, Duncan SH, Jeffery IB, Claesson MJ, Ross RP, Scott KP, O'Toole PW. Neville BA, et al. PLoS One. 2013 Jul 23;8(7):e68919. doi: 10.1371/journal.pone.0068919. Print 2013. PLoS One. 2013. PMID: 23935906 Free PMC article.

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