Ragan MA - Search Results

1

A hybrid clustering approach to recognition of protein families in 114 microbial genomes.

Harlow TJ, Gogarten JP, Ragan MA. Harlow TJ, et al. Among authors: ragan ma. BMC Bioinformatics. 2004 Apr 29;5:45. doi: 10.1186/1471-2105-5-45. BMC Bioinformatics. 2004. PMID: 15115543 Free PMC article.

2

Highways of gene sharing in prokaryotes.

Beiko RG, Harlow TJ, Ragan MA. Beiko RG, et al. Among authors: ragan ma. Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14332-7. doi: 10.1073/pnas.0504068102. Epub 2005 Sep 21. Proc Natl Acad Sci U S A. 2005. PMID: 16176988 Free PMC article.

3

Do different surrogate methods detect lateral genetic transfer events of different relative ages?

Ragan MA, Harlow TJ, Beiko RG. Ragan MA, et al. Trends Microbiol. 2006 Jan;14(1):4-8. doi: 10.1016/j.tim.2005.11.004. Epub 2005 Dec 13. Trends Microbiol. 2006. PMID: 16356716

4

Clustering evolving proteins into homologous families.

Chan CX, Mahbob M, Ragan MA. Chan CX, et al. Among authors: ragan ma. BMC Bioinformatics. 2013 Apr 8;14:120. doi: 10.1186/1471-2105-14-120. BMC Bioinformatics. 2013. PMID: 23566217 Free PMC article.

5

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.

Mar JC, Harlow TJ, Ragan MA. Mar JC, et al. Among authors: ragan ma. BMC Evol Biol. 2005 Jan 28;5:8. doi: 10.1186/1471-2148-5-8. BMC Evol Biol. 2005. PMID: 15676079 Free PMC article.

6

Searching for convergence in phylogenetic Markov chain Monte Carlo.

Beiko RG, Keith JM, Harlow TJ, Ragan MA. Beiko RG, et al. Among authors: ragan ma. Syst Biol. 2006 Aug;55(4):553-65. doi: 10.1080/10635150600812544. Syst Biol. 2006. PMID: 16857650

7

Automatic, context-specific generation of Gene Ontology slims.

Davis MJ, Sehgal MS, Ragan MA. Davis MJ, et al. Among authors: ragan ma. BMC Bioinformatics. 2010 Oct 7;11:498. doi: 10.1186/1471-2105-11-498. BMC Bioinformatics. 2010. PMID: 20929524 Free PMC article.

8

Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.

Garcia Castro A, Thoraval S, Garcia LJ, Ragan MA. Garcia Castro A, et al. Among authors: ragan ma. BMC Bioinformatics. 2005 Apr 7;6:87. doi: 10.1186/1471-2105-6-87. BMC Bioinformatics. 2005. PMID: 15813976 Free PMC article.

9

A word-oriented approach to alignment validation.

Beiko RG, Chan CX, Ragan MA. Beiko RG, et al. Among authors: ragan ma. Bioinformatics. 2005 May 15;21(10):2230-9. doi: 10.1093/bioinformatics/bti335. Epub 2005 Feb 22. Bioinformatics. 2005. PMID: 15728118 Free article.

10

MACHOS: Markov clusters of homologous subsequences.

Wong S, Ragan MA. Wong S, et al. Among authors: ragan ma. Bioinformatics. 2008 Jul 1;24(13):i77-85. doi: 10.1093/bioinformatics/btn144. Bioinformatics. 2008. PMID: 18586748 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

160 results

Search Page