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A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.
Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart PJ, Penny D, Martin W. Esser C, et al. Among authors: penny d. Mol Biol Evol. 2004 Sep;21(9):1643-60. doi: 10.1093/molbev/msh160. Epub 2004 May 21. Mol Biol Evol. 2004. PMID: 15155797
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D. Martin W, et al. Among authors: penny d. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12246-51. doi: 10.1073/pnas.182432999. Epub 2002 Sep 6. Proc Natl Acad Sci U S A. 2002. PMID: 12218172 Free PMC article.
A frequency-dependent significance test for parsimony.
Steel M, Lockhart PJ, Penny D. Steel M, et al. Among authors: penny d. Mol Phylogenet Evol. 1995 Mar;4(1):64-71. doi: 10.1006/mpev.1995.1006. Mol Phylogenet Evol. 1995. PMID: 7620636
The place of Amborella within the radiation of angiosperms.
Lockhart PJ, Penny D. Lockhart PJ, et al. Among authors: penny d. Trends Plant Sci. 2005 May;10(5):201-2. doi: 10.1016/j.tplants.2005.03.006. Trends Plant Sci. 2005. PMID: 15882650 No abstract available.
Systematic error in seed plant phylogenomics.
Zhong B, Deusch O, Goremykin VV, Penny D, Biggs PJ, Atherton RA, Nikiforova SV, Lockhart PJ. Zhong B, et al. Among authors: penny d. Genome Biol Evol. 2011;3:1340-8. doi: 10.1093/gbe/evr105. Epub 2011 Oct 19. Genome Biol Evol. 2011. PMID: 22016337 Free PMC article.
397 results