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104 results

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Page 1
A preprocessor for shotgun assembly of large genomes.
Roberts M, Hunt BR, Yorke JA, Bolanos RA, Delcher AL. Roberts M, et al. Among authors: yorke ja. J Comput Biol. 2004;11(4):734-52. doi: 10.1089/cmb.2004.11.734. J Comput Biol. 2004. PMID: 15579242
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: yorke ja. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
Reducing storage requirements for biological sequence comparison.
Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA. Roberts M, et al. Among authors: yorke ja. Bioinformatics. 2004 Dec 12;20(18):3363-9. doi: 10.1093/bioinformatics/bth408. Epub 2004 Jul 15. Bioinformatics. 2004. PMID: 15256412
Figaro: a novel statistical method for vector sequence removal.
White JR, Roberts M, Yorke JA, Pop M. White JR, et al. Among authors: yorke ja. Bioinformatics. 2008 Feb 15;24(4):462-7. doi: 10.1093/bioinformatics/btm632. Epub 2008 Jan 17. Bioinformatics. 2008. PMID: 18202027 Free PMC article.
Duplication count distributions in DNA sequences.
Sindi SS, Hunt BR, Yorke JA. Sindi SS, et al. Among authors: yorke ja. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Dec;78(6 Pt 1):061912. doi: 10.1103/PhysRevE.78.061912. Epub 2008 Dec 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2008. PMID: 19256873 Free PMC article.
GAGE: A critical evaluation of genome assemblies and assembly algorithms.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: yorke ja. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.
The MaSuRCA genome assembler.
Zimin AV, Marçais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. Zimin AV, et al. Among authors: yorke ja. Bioinformatics. 2013 Nov 1;29(21):2669-77. doi: 10.1093/bioinformatics/btt476. Epub 2013 Aug 29. Bioinformatics. 2013. PMID: 23990416 Free PMC article.
Sequencing and assembly of the 22-gb loblolly pine genome.
Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Zimin A, et al. Among authors: yorke ja. Genetics. 2014 Mar;196(3):875-90. doi: 10.1534/genetics.113.159715. Genetics. 2014. PMID: 24653210 Free PMC article.
Convex error growth patterns in a global weather model.
Harlim J, Oczkowski M, Yorke JA, Kalnay E, Hunt BR. Harlim J, et al. Among authors: yorke ja. Phys Rev Lett. 2005 Jun 10;94(22):228501. doi: 10.1103/PhysRevLett.94.228501. Epub 2005 Jun 10. Phys Rev Lett. 2005. PMID: 16090440
104 results