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ProtoNet 4.0: a hierarchical classification of one million protein sequences.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D216-8. doi: 10.1093/nar/gki007.
Nucleic Acids Res. 2005.
PMID: 15608180
Free PMC article.
Selecting targets for structural determination by navigating in a graph of protein families.
Portugaly E, Kifer I, Linial M.
Portugaly E, et al.
Bioinformatics. 2002 Jul;18(7):899-907. doi: 10.1093/bioinformatics/18.7.899.
Bioinformatics. 2002.
PMID: 12117787
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ProtoNet: hierarchical classification of the protein space.
Sasson O, Vaaknin A, Fleischer H, Portugaly E, Bilu Y, Linial N, Linial M.
Sasson O, et al. Among authors: portugaly e.
Nucleic Acids Res. 2003 Jan 1;31(1):348-52. doi: 10.1093/nar/gkg096.
Nucleic Acids Res. 2003.
PMID: 12520020
Free PMC article.
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EVEREST: automatic identification and classification of protein domains in all protein sequences.
Portugaly E, Harel A, Linial N, Linial M.
Portugaly E, et al.
BMC Bioinformatics. 2006 Jun 2;7:277. doi: 10.1186/1471-2105-7-277.
BMC Bioinformatics. 2006.
PMID: 16749920
Free PMC article.
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EVEREST: a collection of evolutionary conserved protein domains.
Portugaly E, Linial N, Linial M.
Portugaly E, et al.
Nucleic Acids Res. 2007 Jan;35(Database issue):D241-6. doi: 10.1093/nar/gkl850. Epub 2006 Nov 11.
Nucleic Acids Res. 2007.
PMID: 17099230
Free PMC article.
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Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
Loewenstein Y, Portugaly E, Fromer M, Linial M.
Loewenstein Y, et al. Among authors: portugaly e.
Bioinformatics. 2008 Jul 1;24(13):i41-9. doi: 10.1093/bioinformatics/btn174.
Bioinformatics. 2008.
PMID: 18586742
Free PMC article.
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Estimating the probability for a protein to have a new fold: A statistical computational model.
Portugaly E, Linial M.
Portugaly E, et al.
Proc Natl Acad Sci U S A. 2000 May 9;97(10):5161-6. doi: 10.1073/pnas.090559497.
Proc Natl Acad Sci U S A. 2000.
PMID: 10792051
Free PMC article.
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Hidden Markov model speed heuristic and iterative HMM search procedure.
Johnson LS, Eddy SR, Portugaly E.
Johnson LS, et al. Among authors: portugaly e.
BMC Bioinformatics. 2010 Aug 18;11:431. doi: 10.1186/1471-2105-11-431.
BMC Bioinformatics. 2010.
PMID: 20718988
Free PMC article.
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