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The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Tanino M, Debily MA, Tamura T, Hishiki T, Ogasawara O, Murakawa K, Kawamoto S, Itoh K, Watanabe S, de Souza SJ, Imbeaud S, Graudens E, Eveno E, Hilton P, Sudo Y, Kelso J, Ikeo K, Imanishi T, Gojobori T, Auffray C, Hide W, Okubo K. Tanino M, et al. Among authors: de souza sj. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D567-72. doi: 10.1093/nar/gki104. Nucleic Acids Res. 2005. PMID: 15608263 Free PMC article.
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2; Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang … See abstract for full author list ➔ Genome Information Integration Project And H-Invitational 2, et al. Among authors: de souza sj. Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. doi: 10.1093/nar/gkm999. Epub 2007 Dec 18. Nucleic Acids Res. 2008. PMID: 18089548 Free PMC article.
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, … See abstract for full author list ➔ Imanishi T, et al. Among authors: de souza sj. PLoS Biol. 2004 Jun;2(6):e162. doi: 10.1371/journal.pbio.0020162. Epub 2004 Apr 20. PLoS Biol. 2004. PMID: 15103394 Free PMC article.
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.
Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA Jr, Dias Neto E, Grivet M, Gruber A, Guimaraes PE, Hide W, Iseli C, Jongeneel CV, Kelso J, Nagai MA, Ojopi EP, Osorio EC, Reis EM, Riggins GJ, Simpson AJ, de Souza S, Stevenson BJ, Strausberg RL, Tajara EH, Verjovski-Almeida S, Acencio ML, Bengtson MH, Bettoni F, Bodmer WF, Briones MR, Camargo LP, Cavenee W, Cerutti JM, Coelho Andrade LE, Costa dos Santos PC, Ramos Costa MC, da Silva IT, Estécio MR, Sa Ferreira K, Furnari FB, Faria M Jr, Galante PA, Guimaraes GS, Holanda AJ, Kimura ET, Leerkes MR, Lu X, Maciel RM, Martins EA, Massirer KB, Melo AS, Mestriner CA, Miracca EC, Miranda LL, Nobrega FG, Oliveira PS, Paquola AC, Pandolfi JR, Campos Pardini MI, Passetti F, Quackenbush J, Schnabel B, Sogayar MC, Souza JE, Valentini SR, Zaiats AC, Amaral EJ, Arnaldi LA, de Araújo AG, de Bessa SA, Bicknell DC, Ribeiro de Camaro ME, Carraro DM, Carrer H, Carvalho AF, Colin C, Costa F, Curcio C, Guerreiro da Silva ID, Pereira da Silva N, Dellamano M, El-Dorry H, Espreafico EM, Scattone Ferreira AJ, Ayres Ferreira C, Fortes MA, Gama AH, Giannella-Neto D, Giannella ML, Giorgi RR, Goldman GH, Goldman MH, Hackel C, Ho PL, Kimura EM, Kow… See abstract for full author list ➔ Brentani H, et al. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13418-23. doi: 10.1073/pnas.1233632100. Epub 2003 Oct 30. Proc Natl Acad Sci U S A. 2003. PMID: 14593198 Free PMC article.
The impact of SNPs on the interpretation of SAGE and MPSS experimental data.
Silva AP, De Souza JE, Galante PA, Riggins GJ, De Souza SJ, Camargo AA. Silva AP, et al. Among authors: de souza sj, de souza je. Nucleic Acids Res. 2004 Nov 23;32(20):6104-10. doi: 10.1093/nar/gkh937. Print 2004. Nucleic Acids Res. 2004. PMID: 15562001 Free PMC article.
Long-range heterogeneity at the 3' ends of human mRNAs.
Iseli C, Stevenson BJ, de Souza SJ, Samaia HB, Camargo AA, Buetow KH, Strausberg RL, Simpson AJ, Bucher P, Jongeneel CV. Iseli C, et al. Among authors: de souza sj. Genome Res. 2002 Jul;12(7):1068-74. doi: 10.1101/gr.62002. Genome Res. 2002. PMID: 12097343 Free PMC article.
ExInt: an Exon/Intron database.
Sakharkar M, Long M, Tan TW, de Souza SJ. Sakharkar M, et al. Among authors: de souza sj. Nucleic Acids Res. 2000 Jan 1;28(1):191-2. doi: 10.1093/nar/28.1.191. Nucleic Acids Res. 2000. PMID: 10592222 Free PMC article.
Exploiting ESTs in human health.
de Souza SJ. de Souza SJ. Methods Mol Biol. 2009;533:311-24. doi: 10.1007/978-1-60327-136-3_15. Methods Mol Biol. 2009. PMID: 19277565
An anatomy of normal and malignant gene expression.
Boon K, Osorio EC, Greenhut SF, Schaefer CF, Shoemaker J, Polyak K, Morin PJ, Buetow KH, Strausberg RL, De Souza SJ, Riggins GJ. Boon K, et al. Among authors: de souza sj. Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11287-92. doi: 10.1073/pnas.152324199. Epub 2002 Jul 15. Proc Natl Acad Sci U S A. 2002. PMID: 12119410 Free PMC article.
pp-Blast: a "pseudo-parallel" Blast.
Osório EC, de Souza JE, Zaiats AC, de Oliveira PS, de Souza SJ. Osório EC, et al. Among authors: de souza sj, de souza je, de oliveira ps. Braz J Med Biol Res. 2003 Apr;36(4):463-4. doi: 10.1590/s0100-879x2003000400007. Epub 2003 Apr 8. Braz J Med Biol Res. 2003. PMID: 12700823 Free article.
135 results