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Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA. Richards S, et al. Among authors: matthews bb. Genome Res. 2005 Jan;15(1):1-18. doi: 10.1101/gr.3059305. Genome Res. 2005. PMID: 15632085 Free PMC article.
FlyBase: updates to the Drosophila genes and genomes database.
Öztürk-Çolak A, Marygold SJ, Antonazzo G, Attrill H, Goutte-Gattat D, Jenkins VK, Matthews BB, Millburn G, Dos Santos G, Tabone CJ; FlyBase Consortium. Öztürk-Çolak A, et al. Among authors: matthews bb. Genetics. 2024 May 7;227(1):iyad211. doi: 10.1093/genetics/iyad211. Genetics. 2024. PMID: 38301657 Free PMC article.
FlyBase: a guided tour of highlighted features.
Gramates LS, Agapite J, Attrill H, Calvi BR, Crosby MA, Dos Santos G, Goodman JL, Goutte-Gattat D, Jenkins VK, Kaufman T, Larkin A, Matthews BB, Millburn G, Strelets VB; the FlyBase Consortium. Gramates LS, et al. Among authors: matthews bb. Genetics. 2022 Apr 4;220(4):iyac035. doi: 10.1093/genetics/iyac035. Genetics. 2022. PMID: 35266522 Free PMC article.
FlyBase 2.0: the next generation.
Thurmond J, Goodman JL, Strelets VB, Attrill H, Gramates LS, Marygold SJ, Matthews BB, Millburn G, Antonazzo G, Trovisco V, Kaufman TC, Calvi BR; FlyBase Consortium. Thurmond J, et al. Among authors: matthews bb. Nucleic Acids Res. 2019 Jan 8;47(D1):D759-D765. doi: 10.1093/nar/gky1003. Nucleic Acids Res. 2019. PMID: 30364959 Free PMC article. Review.
Exploring FlyBase Data Using QuickSearch.
Marygold SJ, Antonazzo G, Attrill H, Costa M, Crosby MA, Dos Santos G, Goodman JL, Gramates LS, Matthews BB, Rey AJ, Thurmond J; FlyBase Consortium. Marygold SJ, et al. Among authors: matthews bb. Curr Protoc Bioinformatics. 2016 Dec 8;56:1.31.1-1.31.23. doi: 10.1002/cpbi.19. Curr Protoc Bioinformatics. 2016. PMID: 27930807 Free PMC article.
FlyBase at 25: looking to the future.
Gramates LS, Marygold SJ, Santos GD, Urbano JM, Antonazzo G, Matthews BB, Rey AJ, Tabone CJ, Crosby MA, Emmert DB, Falls K, Goodman JL, Hu Y, Ponting L, Schroeder AJ, Strelets VB, Thurmond J, Zhou P; the FlyBase Consortium. Gramates LS, et al. Among authors: matthews bb. Nucleic Acids Res. 2017 Jan 4;45(D1):D663-D671. doi: 10.1093/nar/gkw1016. Epub 2016 Oct 30. Nucleic Acids Res. 2017. PMID: 27799470 Free PMC article.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM; FlyBase Consortium. Matthews BB, et al. G3 (Bethesda). 2015 Jun 24;5(8):1721-36. doi: 10.1534/g3.115.018929. G3 (Bethesda). 2015. PMID: 26109357 Free PMC article.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM; FlyBase Consortium. Crosby MA, et al. Among authors: matthews bb. G3 (Bethesda). 2015 Jun 24;5(8):1737-49. doi: 10.1534/g3.115.018937. G3 (Bethesda). 2015. PMID: 26109356 Free PMC article.
14 results