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Page 1
The genome of the social amoeba Dictyostelium discoideum.
Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A. Eichinger L, et al. Among authors: kummerfeld s. Nature. 2005 May 5;435(7038):43-57. doi: 10.1038/nature03481. Nature. 2005. PMID: 15875012 Free PMC article.
The SUPERFAMILY database in 2004: additions and improvements.
Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J. Madera M, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9. doi: 10.1093/nar/gkh117. Nucleic Acids Res. 2004. PMID: 14681402 Free PMC article.
Non-canonical reader modules of BAZ1A promote recovery from DNA damage.
Oppikofer M, Sagolla M, Haley B, Zhang HM, Kummerfeld SK, Sudhamsu J, Flynn EM, Bai T, Zhang J, Ciferri C, Cochran AG. Oppikofer M, et al. Nat Commun. 2017 Oct 11;8(1):862. doi: 10.1038/s41467-017-00866-0. Nat Commun. 2017. PMID: 29021563 Free PMC article.
The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, … See abstract for full author list ➔ Carninci P, et al. Among authors: kummerfeld sk. Science. 2005 Sep 2;309(5740):1559-63. doi: 10.1126/science.1112014. Science. 2005. PMID: 16141072
DBD: a transcription factor prediction database.
Kummerfeld SK, Teichmann SA. Kummerfeld SK, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D74-81. doi: 10.1093/nar/gkj131. Nucleic Acids Res. 2006. PMID: 16381970 Free PMC article.
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, Mattick JS. Frith MC, et al. Among authors: kummerfeld sk. RNA Biol. 2006 Jan-Mar;3(1):40-8. doi: 10.4161/rna.3.1.2789. Epub 2006 Apr 3. RNA Biol. 2006. PMID: 17114936
48 results