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Origin and evolution of new exons in rodents.
Wang W, Zheng H, Yang S, Yu H, Li J, Jiang H, Su J, Yang L, Zhang J, McDermott J, Samudrala R, Wang J, Yang H, Yu J, Kristiansen K, Wong GK, Wang J. Wang W, et al. Among authors: zhang j. Genome Res. 2005 Sep;15(9):1258-64. doi: 10.1101/gr.3929705. Epub 2005 Aug 18. Genome Res. 2005. PMID: 16109974 Free PMC article.
RePS: a sequence assembler that masks exact repeats identified from the shotgun data.
Wang J, Wong GK, Ni P, Han Y, Huang X, Zhang J, Ye C, Zhang Y, Hu J, Zhang K, Xu X, Cong L, Lu H, Ren X, Ren X, He J, Tao L, Passey DA, Wang J, Yang H, Yu J, Li S. Wang J, et al. Among authors: zhang j, zhang k, zhang y. Genome Res. 2002 May;12(5):824-31. doi: 10.1101/gr.165102. Genome Res. 2002. PMID: 11997349 Free PMC article.
High rate of chimeric gene origination by retroposition in plant genomes.
Wang W, Zheng H, Fan C, Li J, Shi J, Cai Z, Zhang G, Liu D, Zhang J, Vang S, Lu Z, Wong GK, Long M, Wang J. Wang W, et al. Among authors: zhang g, zhang j. Plant Cell. 2006 Aug;18(8):1791-802. doi: 10.1105/tpc.106.041905. Epub 2006 Jul 7. Plant Cell. 2006. PMID: 16829590 Free PMC article.
Evolutionary transients in the rice transcriptome.
Wang J, Zhang J, Li R, Zheng H, Li J, Zhang Y, Li H, Ni P, Li S, Li S, Wang J, Liu D, McDermott J, Samudrala R, Liu S, Wang J, Yang H, Yu J, Wong GK. Wang J, et al. Among authors: zhang j, zhang y. Genomics Proteomics Bioinformatics. 2010 Dec;8(4):211-28. doi: 10.1016/S1672-0229(10)60023-X. Genomics Proteomics Bioinformatics. 2010. PMID: 21382590 Free PMC article.
Compositional gradients in Gramineae genes.
Wong GK, Wang J, Tao L, Tan J, Zhang J, Passey DA, Yu J. Wong GK, et al. Among authors: zhang j. Genome Res. 2002 Jun;12(6):851-6. doi: 10.1101/gr.189102. Genome Res. 2002. PMID: 12045139 Free PMC article.
A draft sequence of the rice genome (Oryza sativa L. ssp. indica).
Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H. Yu J, et al. Among authors: zhang g, zhang j, zhang k, zhang x, zhang y. Science. 2002 Apr 5;296(5565):79-92. doi: 10.1126/science.1068037. Science. 2002. PMID: 11935017
The Genomes of Oryza sativa: a history of duplications.
Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Wang J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Wang J, Wang X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Liu J, Xiao Y, Bu D, Tan J, Yang L, Ye C, Zhang J, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Zhang Z, Zhang Y, Huang X, Su Z, Tong W, Li J, Tong Z, Li S, Ye J, Wang L, Fang L, Lei T, Chen C, Chen H, Xu Z, Li H, Huang H, Zhang F, Xu H, Li N, Zhao C, Li S, Dong L, Huang Y, Li L, Xi Y, Qi Q, Li W, Zhang B, Hu W, Zhang Y, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wang J, Wong GK, Yang H. Yu J, et al. Among authors: zhang b, zhang f, zhang j, zhang z, zhang x, zhang y. PLoS Biol. 2005 Feb;3(2):e38. doi: 10.1371/journal.pbio.0030038. Epub 2005 Feb 1. PLoS Biol. 2005. PMID: 15685292 Free PMC article.
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