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Quality scores and SNP detection in sequencing-by-synthesis systems.
Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB. Brockman W, et al. Among authors: giannoukos g. Genome Res. 2008 May;18(5):763-70. doi: 10.1101/gr.070227.107. Epub 2008 Jan 22. Genome Res. 2008. PMID: 18212088 Free PMC article.
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. Mikkelsen TS, et al. Among authors: giannoukos g. Nature. 2007 Aug 2;448(7153):553-60. doi: 10.1038/nature06008. Epub 2007 Jul 1. Nature. 2007. PMID: 17603471 Free PMC article.
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium; Petrosino JF, Knight R, Birren BW. Haas BJ, et al. Among authors: giannoukos g. Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6. Genome Res. 2011. PMID: 21212162 Free PMC article.
A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454.
Lennon NJ, Lintner RE, Anderson S, Alvarez P, Barry A, Brockman W, Daza R, Erlich RL, Giannoukos G, Green L, Hollinger A, Hoover CA, Jaffe DB, Juhn F, McCarthy D, Perrin D, Ponchner K, Powers TL, Rizzolo K, Robbins D, Ryan E, Russ C, Sparrow T, Stalker J, Steelman S, Weiand M, Zimmer A, Henn MR, Nusbaum C, Nicol R. Lennon NJ, et al. Among authors: giannoukos g. Genome Biol. 2010;11(2):R15. doi: 10.1186/gb-2010-11-2-r15. Epub 2010 Feb 5. Genome Biol. 2010. PMID: 20137071 Free PMC article.
Analysis of high-throughput sequencing and annotation strategies for phage genomes.
Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW. Henn MR, et al. Among authors: giannoukos g. PLoS One. 2010 Feb 5;5(2):e9083. doi: 10.1371/journal.pone.0009083. PLoS One. 2010. PMID: 20140207 Free PMC article.
Simultaneous generation of many RNA-seq libraries in a single reaction.
Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J. Shishkin AA, et al. Among authors: giannoukos g. Nat Methods. 2015 Apr;12(4):323-5. doi: 10.1038/nmeth.3313. Epub 2015 Mar 2. Nat Methods. 2015. PMID: 25730492 Free PMC article.
31 results