Sachidanandam R - Search Results

1

GeneSeer: a sage for gene names and genomic resources.

Olson AJ, Tully T, Sachidanandam R. Olson AJ, et al. Among authors: sachidanandam r. BMC Genomics. 2005 Sep 21;6:134. doi: 10.1186/1471-2164-6-134. BMC Genomics. 2005. PMID: 16176584 Free PMC article.

2

RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs.

Olson A, Sheth N, Lee JS, Hannon G, Sachidanandam R. Olson A, et al. Among authors: sachidanandam r. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D153-7. doi: 10.1093/nar/gkj051. Nucleic Acids Res. 2006. PMID: 16381835 Free PMC article.

3

Analysis of large-scale sequencing of small RNAs.

Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R. Olson AJ, et al. Among authors: sachidanandam r. Pac Symp Biocomput. 2008:126-36. doi: 10.1142/9789812776136_0014. Pac Symp Biocomput. 2008. PMID: 18229681 Free article.

4

Features of 5'-splice-site efficiency derived from disease-causing mutations and comparative genomics.

Roca X, Olson AJ, Rao AR, Enerly E, Kristensen VN, Børresen-Dale AL, Andresen BS, Krainer AR, Sachidanandam R. Roca X, et al. Among authors: sachidanandam r. Genome Res. 2008 Jan;18(1):77-87. doi: 10.1101/gr.6859308. Epub 2007 Nov 21. Genome Res. 2008. PMID: 18032726 Free PMC article.

5

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R. Faith JJ, et al. Among authors: sachidanandam r. BMC Bioinformatics. 2007 Sep 18;8:344. doi: 10.1186/1471-2105-8-344. BMC Bioinformatics. 2007. PMID: 17877794 Free PMC article.

6

GObar: a gene ontology based analysis and visualization tool for gene sets.

Lee JS, Katari G, Sachidanandam R. Lee JS, et al. Among authors: sachidanandam r. BMC Bioinformatics. 2005 Jul 25;6:189. doi: 10.1186/1471-2105-6-189. BMC Bioinformatics. 2005. PMID: 16042800 Free PMC article.

7

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.

Smith ST, Wickramasinghe P, Olson A, Loukinov D, Lin L, Deng J, Xiong Y, Rux J, Sachidanandam R, Sun H, Lobanenkov V, Zhou J. Smith ST, et al. Among authors: sachidanandam r. Dev Biol. 2009 Apr 15;328(2):518-28. doi: 10.1016/j.ydbio.2008.12.039. Epub 2009 Jan 8. Dev Biol. 2009. PMID: 19210964 Free PMC article.

8

Comprehensive splice-site analysis using comparative genomics.

Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, Sachidanandam R. Sheth N, et al. Among authors: sachidanandam r. Nucleic Acids Res. 2006;34(14):3955-67. doi: 10.1093/nar/gkl556. Epub 2006 Aug 12. Nucleic Acids Res. 2006. PMID: 16914448 Free PMC article.

9

RNAi: design and analysis.

Sachidanandam R. Sachidanandam R. Curr Protoc Bioinformatics. 2004 Sep;Chapter 12:Unit 12.3. doi: 10.1002/0471250953.bi1203s6. Curr Protoc Bioinformatics. 2004. PMID: 18428717

10

Second-generation shRNA libraries covering the mouse and human genomes.

Silva JM, Li MZ, Chang K, Ge W, Golding MC, Rickles RJ, Siolas D, Hu G, Paddison PJ, Schlabach MR, Sheth N, Bradshaw J, Burchard J, Kulkarni A, Cavet G, Sachidanandam R, McCombie WR, Cleary MA, Elledge SJ, Hannon GJ. Silva JM, et al. Among authors: sachidanandam r. Nat Genet. 2005 Nov;37(11):1281-8. doi: 10.1038/ng1650. Epub 2005 Oct 2. Nat Genet. 2005. PMID: 16200065

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