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'On-the-fly' or 'generate-first' modeling?
Blinov ML, Faeder JR, Yang J, Goldstein B, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Nat Biotechnol. 2005 Nov;23(11):1344-5; author reply 1345. doi: 10.1038/nbt1105-1344. Nat Biotechnol. 2005. PMID: 16273053 No abstract available.
Depicting signaling cascades.
Blinov ML, Yang J, Faeder JR, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Nat Biotechnol. 2006 Feb;24(2):137-8; author reply 138. doi: 10.1038/nbt0206-137. Nat Biotechnol. 2006. PMID: 16465147 No abstract available.
Rules for modeling signal-transduction systems.
Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Hlavacek WS, et al. Sci STKE. 2006 Jul 18;2006(344):re6. doi: 10.1126/stke.3442006re6. Sci STKE. 2006. PMID: 16849649 Review.
The complexity of complexes in signal transduction.
Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B. Hlavacek WS, et al. Biotechnol Bioeng. 2003 Dec 30;84(7):783-94. doi: 10.1002/bit.10842. Biotechnol Bioeng. 2003. PMID: 14708119 Review.
Kinetic Monte Carlo method for rule-based modeling of biochemical networks.
Yang J, Monine MI, Faeder JR, Hlavacek WS. Yang J, et al. Among authors: hlavacek ws. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):031910. doi: 10.1103/PhysRevE.78.031910. Epub 2008 Sep 10. Phys Rev E Stat Nonlin Soft Matter Phys. 2008. PMID: 18851068 Free PMC article.
Rule-based modeling of biochemical systems with BioNetGen.
Faeder JR, Blinov ML, Hlavacek WS. Faeder JR, et al. Among authors: hlavacek ws. Methods Mol Biol. 2009;500:113-67. doi: 10.1007/978-1-59745-525-1_5. Methods Mol Biol. 2009. PMID: 19399430 Free article.
Modeling the early signaling events mediated by FcepsilonRI.
Goldstein B, Faeder JR, Hlavacek WS, Blinov ML, Redondo A, Wofsy C. Goldstein B, et al. Among authors: hlavacek ws. Mol Immunol. 2002 Sep;38(16-18):1213-9. doi: 10.1016/s0161-5890(02)00066-4. Mol Immunol. 2002. PMID: 12217386 Review.
Guidelines for visualizing and annotating rule-based models.
Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Chylek LA, et al. Among authors: hlavacek ws. Mol Biosyst. 2011 Oct;7(10):2779-95. doi: 10.1039/c1mb05077j. Epub 2011 Jun 7. Mol Biosyst. 2011. PMID: 21647530 Free PMC article.
115 results