Bassett DE - Search Results

1

Rosetta error model for gene expression analysis.

Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE. Weng L, et al. Among authors: bassett de. Bioinformatics. 2006 May 1;22(9):1111-21. doi: 10.1093/bioinformatics/btl045. Epub 2006 Mar 7. Bioinformatics. 2006. PMID: 16522673

2

PPARalpha siRNA-treated expression profiles uncover the causal sufficiency network for compound-induced liver hypertrophy.

Dai X, De Souza AT, Dai H, Lewis DL, Lee CK, Spencer AG, Herweijer H, Hagstrom JE, Linsley PS, Bassett DE, Ulrich RG, He YD. Dai X, et al. Among authors: bassett de. PLoS Comput Biol. 2007 Mar 2;3(3):e30. doi: 10.1371/journal.pcbi.0030030. Epub 2007 Jan 2. PLoS Comput Biol. 2007. PMID: 17335344 Free PMC article.

3

Drug target validation and identification of secondary drug target effects using DNA microarrays.

Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE Jr, Hartwell LH, Brown PO, Friend SH. Marton MJ, et al. Among authors: bassett de jr. Nat Med. 1998 Nov;4(11):1293-301. doi: 10.1038/3282. Nat Med. 1998. PMID: 9809554

4

Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease.

Mason MJ, Schinke C, Eng CLP, Towfic F, Gruber F, Dervan A, White BS, Pratapa A, Guan Y, Chen H, Cui Y, Li B, Yu T, Chaibub Neto E, Mavrommatis K, Ortiz M, Lyzogubov V, Bisht K, Dai HY, Schmitz F, Flynt E, Dan Rozelle, Danziger SA, Ratushny A; Multiple Myeloma DREAM Consortium; Dalton WS, Goldschmidt H, Avet-Loiseau H, Samur M, Hayete B, Sonneveld P, Shain KH, Munshi N, Auclair D, Hose D, Morgan G, Trotter M, Bassett D, Goke J, Walker BA, Thakurta A, Guinney J. Mason MJ, et al. Leukemia. 2020 Jul;34(7):1866-1874. doi: 10.1038/s41375-020-0742-z. Epub 2020 Feb 14. Leukemia. 2020. PMID: 32060406 Free PMC article.

5

A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.

Aguilar B, Gibbs DL, Reiss DJ, McConnell M, Danziger SA, Dervan A, Trotter M, Bassett D, Hershberg R, Ratushny AV, Shmulevich I. Aguilar B, et al. Gigascience. 2020 Jul 1;9(7):giaa075. doi: 10.1093/gigascience/giaa075. Gigascience. 2020. PMID: 32696951 Free PMC article.

6

Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma.

Wall MA, Turkarslan S, Wu WJ, Danziger SA, Reiss DJ, Mason MJ, Dervan AP, Trotter MWB, Bassett D, Hershberg RM, Lomana ALG, Ratushny AV, Baliga NS. Wall MA, et al. Among authors: bassett d. NPJ Precis Oncol. 2021 Jun 28;5(1):60. doi: 10.1038/s41698-021-00185-0. NPJ Precis Oncol. 2021. PMID: 34183722 Free PMC article.

7

Integrative network modeling reveals mechanisms underlying T cell exhaustion.

Bolouri H, Young M, Beilke J, Johnson R, Fox B, Huang L, Santini CC, Hill CM, Vries AVV, Shannon PT, Dervan A, Sivakumar P, Trotter M, Bassett D, Ratushny A. Bolouri H, et al. Among authors: bassett d. Sci Rep. 2020 Feb 5;10(1):1915. doi: 10.1038/s41598-020-58600-8. Sci Rep. 2020. PMID: 32024856 Free PMC article.

8

Gene expression informatics--it's all in your mine.

Bassett DE Jr, Eisen MB, Boguski MS. Bassett DE Jr, et al. Nat Genet. 1999 Jan;21(1 Suppl):51-5. doi: 10.1038/4478. Nat Genet. 1999. PMID: 9915502 Review.

9

Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs.

Mushegian AR, Bassett DE Jr, Boguski MS, Bork P, Koonin EV. Mushegian AR, et al. Among authors: bassett de jr. Proc Natl Acad Sci U S A. 1997 May 27;94(11):5831-6. doi: 10.1073/pnas.94.11.5831. Proc Natl Acad Sci U S A. 1997. PMID: 9159160 Free PMC article.

10

PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences.

Stricker NL, Christopherson KS, Yi BA, Schatz PJ, Raab RW, Dawes G, Bassett DE Jr, Bredt DS, Li M. Stricker NL, et al. Among authors: bassett de jr. Nat Biotechnol. 1997 Apr;15(4):336-42. doi: 10.1038/nbt0497-336. Nat Biotechnol. 1997. PMID: 9094134

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