Bakalarski CE - Search Results

1

Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation.

Everley PA, Bakalarski CE, Elias JE, Waghorne CG, Beausoleil SA, Gerber SA, Faherty BK, Zetter BR, Gygi SP. Everley PA, et al. Among authors: bakalarski ce. J Proteome Res. 2006 May;5(5):1224-31. doi: 10.1021/pr0504891. J Proteome Res. 2006. PMID: 16674112

2

A proteomic strategy for gaining insights into protein sumoylation in yeast.

Denison C, Rudner AD, Gerber SA, Bakalarski CE, Moazed D, Gygi SP. Denison C, et al. Among authors: bakalarski ce. Mol Cell Proteomics. 2005 Mar;4(3):246-54. doi: 10.1074/mcp.M400154-MCP200. Epub 2004 Nov 12. Mol Cell Proteomics. 2005. PMID: 15542864 Free article.

3

Proteomic profiling of ClpXP substrates after DNA damage reveals extensive instability within SOS regulon.

Neher SB, Villén J, Oakes EC, Bakalarski CE, Sauer RT, Gygi SP, Baker TA. Neher SB, et al. Among authors: bakalarski ce. Mol Cell. 2006 Apr 21;22(2):193-204. doi: 10.1016/j.molcel.2006.03.007. Mol Cell. 2006. PMID: 16630889 Free article.

4

Optimization and use of peptide mass measurement accuracy in shotgun proteomics.

Haas W, Faherty BK, Gerber SA, Elias JE, Beausoleil SA, Bakalarski CE, Li X, Villén J, Gygi SP. Haas W, et al. Among authors: bakalarski ce. Mol Cell Proteomics. 2006 Jul;5(7):1326-37. doi: 10.1074/mcp.M500339-MCP200. Epub 2006 Apr 23. Mol Cell Proteomics. 2006. PMID: 16635985 Free article.

5

Catch-and-release reagents for broadscale quantitative proteomics analyses.

Gartner CA, Elias JE, Bakalarski CE, Gygi SP. Gartner CA, et al. Among authors: bakalarski ce. J Proteome Res. 2007 Apr;6(4):1482-91. doi: 10.1021/pr060605f. Epub 2007 Feb 21. J Proteome Res. 2007. PMID: 17311443

6

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.

Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ. Matsuoka S, et al. Among authors: bakalarski ce. Science. 2007 May 25;316(5828):1160-6. doi: 10.1126/science.1140321. Science. 2007. PMID: 17525332

7

The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics.

Bakalarski CE, Haas W, Dephoure NE, Gygi SP. Bakalarski CE, et al. Anal Bioanal Chem. 2007 Nov;389(5):1409-19. doi: 10.1007/s00216-007-1563-x. Epub 2007 Sep 14. Anal Bioanal Chem. 2007. PMID: 17874083

8

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer.

Rikova K, Guo A, Zeng Q, Possemato A, Yu J, Haack H, Nardone J, Lee K, Reeves C, Li Y, Hu Y, Tan Z, Stokes M, Sullivan L, Mitchell J, Wetzel R, Macneill J, Ren JM, Yuan J, Bakalarski CE, Villen J, Kornhauser JM, Smith B, Li D, Zhou X, Gygi SP, Gu TL, Polakiewicz RD, Rush J, Comb MJ. Rikova K, et al. Among authors: bakalarski ce. Cell. 2007 Dec 14;131(6):1190-203. doi: 10.1016/j.cell.2007.11.025. Cell. 2007. PMID: 18083107 Free article.

9

A quantitative atlas of mitotic phosphorylation.

Dephoure N, Zhou C, Villén J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP. Dephoure N, et al. Among authors: bakalarski ce. Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10762-7. doi: 10.1073/pnas.0805139105. Epub 2008 Jul 31. Proc Natl Acad Sci U S A. 2008. PMID: 18669648 Free PMC article.

10

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses.

Bakalarski CE, Elias JE, Villén J, Haas W, Gerber SA, Everley PA, Gygi SP. Bakalarski CE, et al. J Proteome Res. 2008 Nov;7(11):4756-65. doi: 10.1021/pr800333e. Epub 2008 Sep 18. J Proteome Res. 2008. PMID: 18798661 Free PMC article.

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