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Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation.
J Proteome Res. 2006 May;5(5):1224-31. doi: 10.1021/pr0504891.
J Proteome Res. 2006.
PMID: 16674112
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
Elias JE, Haas W, Faherty BK, Gygi SP.
Elias JE, et al. Among authors: faherty bk.
Nat Methods. 2005 Sep;2(9):667-75. doi: 10.1038/nmeth785.
Nat Methods. 2005.
PMID: 16118637
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Optimization and use of peptide mass measurement accuracy in shotgun proteomics.
Haas W, Faherty BK, Gerber SA, Elias JE, Beausoleil SA, Bakalarski CE, Li X, Villén J, Gygi SP.
Haas W, et al. Among authors: faherty bk.
Mol Cell Proteomics. 2006 Jul;5(7):1326-37. doi: 10.1074/mcp.M500339-MCP200. Epub 2006 Apr 23.
Mol Cell Proteomics. 2006.
PMID: 16635985
Free article.
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Tempest: GPU-CPU computing for high-throughput database spectral matching.
Milloy JA, Faherty BK, Gerber SA.
Milloy JA, et al. Among authors: faherty bk.
J Proteome Res. 2012 Jul 6;11(7):3581-91. doi: 10.1021/pr300338p. Epub 2012 Jun 8.
J Proteome Res. 2012.
PMID: 22640374
Free PMC article.
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MacroSEQUEST: efficient candidate-centric searching and high-resolution correlation analysis for large-scale proteomics data sets.
Faherty BK, Gerber SA.
Faherty BK, et al.
Anal Chem. 2010 Aug 15;82(16):6821-9. doi: 10.1021/ac100783x.
Anal Chem. 2010.
PMID: 20684545
Free PMC article.
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Rapid determination of multiple linear kinase substrate motifs by mass spectrometry.
Kettenbach AN, Wang T, Faherty BK, Madden DR, Knapp S, Bailey-Kellogg C, Gerber SA.
Kettenbach AN, et al. Among authors: faherty bk.
Chem Biol. 2012 May 25;19(5):608-18. doi: 10.1016/j.chembiol.2012.04.011.
Chem Biol. 2012.
PMID: 22633412
Free PMC article.
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Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells.
Kettenbach AN, Schweppe DK, Faherty BK, Pechenick D, Pletnev AA, Gerber SA.
Kettenbach AN, et al. Among authors: faherty bk.
Sci Signal. 2011 Jun 28;4(179):rs5. doi: 10.1126/scisignal.2001497.
Sci Signal. 2011.
PMID: 21712546
Free PMC article.
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The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.
Suryamohan K, Krishnankutty SP, Guillory J, Jevit M, Schröder MS, Wu M, Kuriakose B, Mathew OK, Perumal RC, Koludarov I, Goldstein LD, Senger K, Dixon MD, Velayutham D, Vargas D, Chaudhuri S, Muraleedharan M, Goel R, Chen YJ, Ratan A, Liu P, Faherty B, de la Rosa G, Shibata H, Baca M, Sagolla M, Ziai J, Wright GA, Vucic D, Mohan S, Antony A, Stinson J, Kirkpatrick DS, Hannoush RN, Durinck S, Modrusan Z, Stawiski EW, Wiley K, Raudsepp T, Kini RM, Zachariah A, Seshagiri S.
Suryamohan K, et al.
Nat Genet. 2020 Jan;52(1):106-117. doi: 10.1038/s41588-019-0559-8. Epub 2020 Jan 6.
Nat Genet. 2020.
PMID: 31907489
Free PMC article.
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