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Bioconductor: open software development for computational biology and bioinformatics.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Gentleman RC, et al. Among authors: carey vj. Genome Biol. 2004;5(10):R80. doi: 10.1186/gb-2004-5-10-r80. Epub 2004 Sep 15. Genome Biol. 2004. PMID: 15461798 Free PMC article.
Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: carey vj. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Software for the Integration of Multiomics Experiments in Bioconductor.
Ramos M, Schiffer L, Re A, Azhar R, Basunia A, Rodriguez C, Chan T, Chapman P, Davis SR, Gomez-Cabrero D, Culhane AC, Haibe-Kains B, Hansen KD, Kodali H, Louis MS, Mer AS, Riester M, Morgan M, Carey V, Waldron L. Ramos M, et al. Cancer Res. 2017 Nov 1;77(21):e39-e42. doi: 10.1158/0008-5472.CAN-17-0344. Cancer Res. 2017. PMID: 29092936 Free PMC article.
Importing MAGE-ML format microarray data into BioConductor.
Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B. Durinck S, et al. Among authors: carey vj. Bioinformatics. 2004 Dec 12;20(18):3641-2. doi: 10.1093/bioinformatics/bth396. Epub 2004 Jul 15. Bioinformatics. 2004. PMID: 15256416
The Bioconductor channel in F1000Research.
Huber W, Carey V, Davis S, Hansen KD, Morgan M. Huber W, et al. F1000Res. 2015 Jul 10;4:217. doi: 10.12688/f1000research.6758.2. eCollection 2015. F1000Res. 2015. PMID: 26998224 Free PMC article.
Orchestrating single-cell analysis with Bioconductor.
Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Amezquita RA, et al. Among authors: carey vj. Nat Methods. 2020 Feb;17(2):137-145. doi: 10.1038/s41592-019-0654-x. Epub 2019 Dec 2. Nat Methods. 2020. PMID: 31792435 Free PMC article. Review.
Graphs in molecular biology.
Huber W, Carey VJ, Long L, Falcon S, Gentleman R. Huber W, et al. Among authors: carey vj. BMC Bioinformatics. 2007 Sep 27;8 Suppl 6(Suppl 6):S8. doi: 10.1186/1471-2105-8-S6-S8. BMC Bioinformatics. 2007. PMID: 17903289 Free PMC article. Review.
231 results