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Ten recommendations for organising bioimaging data for archival.
Korir PK, Iudin A, Somasundharam S, Weyand S, Salih O, Hartley M, Sarkans U, Patwardhan A, Kleywegt GJ. Korir PK, et al. Among authors: sarkans u. F1000Res. 2024 Feb 27;12:ELIXIR-1391. doi: 10.12688/f1000research.129720.2. eCollection 2023. F1000Res. 2024. PMID: 38486614 Free PMC article.
Providing open imaging data at scale: An EMBL-EBI perspective.
Hartley M, Iudin A, Padwardhan A, Sarkans U, Yoldaş AK, Kleywegt GJ. Hartley M, et al. Among authors: sarkans u. Histochem Cell Biol. 2023 Sep;160(3):211-221. doi: 10.1007/s00418-023-02216-2. Epub 2023 Aug 3. Histochem Cell Biol. 2023. PMID: 37537341 Free PMC article.
Microarray data representation, annotation and storage.
Brazma A, Sarkans U, Robinson A, Vilo J, Vingron M, Hoheisel J, Fellenberg K. Brazma A, et al. Among authors: sarkans u. Adv Biochem Eng Biotechnol. 2002;77:113-39. doi: 10.1007/3-540-45713-5_7. Adv Biochem Eng Biotechnol. 2002. PMID: 12227734
Standards for systems biology.
Brazma A, Krestyaninova M, Sarkans U. Brazma A, et al. Among authors: sarkans u. Nat Rev Genet. 2006 Aug;7(8):593-605. doi: 10.1038/nrg1922. Nat Rev Genet. 2006. PMID: 16847461 Review.
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A. Rayner TF, et al. Among authors: sarkans u. BMC Bioinformatics. 2006 Nov 6;7:489. doi: 10.1186/1471-2105-7-489. BMC Bioinformatics. 2006. PMID: 17087822 Free PMC article.
Data storage and analysis in ArrayExpress and Expression Profiler.
Rustici G, Kapushesky M, Kolesnikov N, Parkinson H, Sarkans U, Brazma A. Rustici G, et al. Among authors: sarkans u. Curr Protoc Bioinformatics. 2008 Sep;Chapter 7:7.13.1-7.13.27. doi: 10.1002/0471250953.bi0713s23. Curr Protoc Bioinformatics. 2008. PMID: 18819076
A System for Information Management in BioMedical Studies--SIMBioMS.
Krestyaninova M, Zarins A, Viksna J, Kurbatova N, Rucevskis P, Neogi SG, Gostev M, Perheentupa T, Knuuttila J, Barrett A, Lappalainen I, Rung J, Podnieks K, Sarkans U, McCarthy MI, Brazma A. Krestyaninova M, et al. Among authors: sarkans u. Bioinformatics. 2009 Oct 15;25(20):2768-9. doi: 10.1093/bioinformatics/btp420. Epub 2009 Jul 24. Bioinformatics. 2009. PMID: 19633095 Free PMC article.
55 results