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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC. Yooseph S, et al. Among authors: cieplak p. PLoS Biol. 2007 Mar;5(3):e16. doi: 10.1371/journal.pbio.0050016. PLoS Biol. 2007. PMID: 17355171 Free PMC article.
Structural determinants of limited proteolysis.
Kazanov MD, Igarashi Y, Eroshkin AM, Cieplak P, Ratnikov B, Zhang Y, Li Z, Godzik A, Osterman AL, Smith JW. Kazanov MD, et al. Among authors: cieplak p. J Proteome Res. 2011 Aug 5;10(8):3642-51. doi: 10.1021/pr200271w. Epub 2011 Jul 8. J Proteome Res. 2011. PMID: 21682278 Free PMC article.
Basis for substrate recognition and distinction by matrix metalloproteinases.
Ratnikov BI, Cieplak P, Gramatikoff K, Pierce J, Eroshkin A, Igarashi Y, Kazanov M, Sun Q, Godzik A, Osterman A, Stec B, Strongin A, Smith JW. Ratnikov BI, et al. Among authors: cieplak p. Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):E4148-55. doi: 10.1073/pnas.1406134111. Epub 2014 Sep 22. Proc Natl Acad Sci U S A. 2014. PMID: 25246591 Free PMC article.
Quantitative profiling of protease specificity.
Ratnikov BI, Cieplak P, Remacle AG, Nguyen E, Smith JW. Ratnikov BI, et al. Among authors: cieplak p. PLoS Comput Biol. 2021 Feb 22;17(2):e1008101. doi: 10.1371/journal.pcbi.1008101. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33617527 Free PMC article.
Substrate cleavage analysis of furin and related proprotein convertases. A comparative study.
Remacle AG, Shiryaev SA, Oh ES, Cieplak P, Srinivasan A, Wei G, Liddington RC, Ratnikov BI, Parent A, Desjardins R, Day R, Smith JW, Lebl M, Strongin AY. Remacle AG, et al. Among authors: cieplak p. J Biol Chem. 2008 Jul 25;283(30):20897-906. doi: 10.1074/jbc.M803762200. Epub 2008 May 27. J Biol Chem. 2008. PMID: 18505722 Free PMC article.
97 results