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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC. Yooseph S, et al. Among authors: joachimiak mp. PLoS Biol. 2007 Mar;5(3):e16. doi: 10.1371/journal.pbio.0050016. PLoS Biol. 2007. PMID: 17355171 Free PMC article.
Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.
Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD. Chhabra SR, et al. Among authors: joachimiak mp. PLoS One. 2011;6(6):e21470. doi: 10.1371/journal.pone.0021470. Epub 2011 Jun 28. PLoS One. 2011. PMID: 21738675 Free PMC article.
An SF1 affinity model to identify branch point sequences in human introns.
Pastuszak AW, Joachimiak MP, Blanchette M, Rio DC, Brenner SE, Frankel AD. Pastuszak AW, et al. Among authors: joachimiak mp. Nucleic Acids Res. 2011 Mar;39(6):2344-56. doi: 10.1093/nar/gkq1046. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071404 Free PMC article.
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D. Arkin AP, et al. Among authors: joachimiak mp. Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. Nat Biotechnol. 2018. PMID: 29979655 Free PMC article. No abstract available.
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.
Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD. Mukhopadhyay A, et al. Among authors: joachimiak mp. J Bacteriol. 2007 Aug;189(16):5996-6010. doi: 10.1128/JB.00368-07. Epub 2007 Jun 1. J Bacteriol. 2007. PMID: 17545284 Free PMC article.
Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough.
Zhou A, He Z, Redding-Johanson AM, Mukhopadhyay A, Hemme CL, Joachimiak MP, Luo F, Deng Y, Bender KS, He Q, Keasling JD, Stahl DA, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J. Zhou A, et al. Among authors: joachimiak mp. Environ Microbiol. 2010 Oct;12(10):2645-57. doi: 10.1111/j.1462-2920.2010.02234.x. Environ Microbiol. 2010. PMID: 20482586
Response of Desulfovibrio vulgaris to alkaline stress.
Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA. Stolyar S, et al. Among authors: joachimiak mp. J Bacteriol. 2007 Dec;189(24):8944-52. doi: 10.1128/JB.00284-07. Epub 2007 Oct 5. J Bacteriol. 2007. PMID: 17921288 Free PMC article.
Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation.
He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, Keasling JD, Arkin AP, Zhou J. He Z, et al. Among authors: joachimiak mp. Appl Environ Microbiol. 2010 Mar;76(5):1574-86. doi: 10.1128/AEM.02141-09. Epub 2009 Dec 28. Appl Environ Microbiol. 2010. PMID: 20038696 Free PMC article.
48 results