Kallioniemi O - Search Results

1

A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH.

Wicker N, Carles A, Mills IG, Wolf M, Veerakumarasivam A, Edgren H, Boileau F, Wasylyk B, Schalken JA, Neal DE, Kallioniemi O, Poch O. Wicker N, et al. Among authors: kallioniemi o. BMC Genomics. 2007 Mar 29;8:84. doi: 10.1186/1471-2164-8-84. BMC Genomics. 2007. PMID: 17394638 Free PMC article.

2

Data integration from two microarray platforms identifies bi-allelic genetic inactivation of RIC8A in a breast cancer cell line.

Muggerud AA, Edgren H, Wolf M, Kleivi K, Dejeux E, Tost J, Sørlie T, Kallioniemi O. Muggerud AA, et al. Among authors: kallioniemi o. BMC Med Genomics. 2009 May 11;2:26. doi: 10.1186/1755-8794-2-26. BMC Med Genomics. 2009. PMID: 19432969 Free PMC article.

3

TMPRSS2 fusions with oncogenic ETS factors in prostate cancer involve unbalanced genomic rearrangements and are associated with HDAC1 and epigenetic reprogramming.

Iljin K, Wolf M, Edgren H, Gupta S, Kilpinen S, Skotheim RI, Peltola M, Smit F, Verhaegh G, Schalken J, Nees M, Kallioniemi O. Iljin K, et al. Among authors: kallioniemi o. Cancer Res. 2006 Nov 1;66(21):10242-6. doi: 10.1158/0008-5472.CAN-06-1986. Cancer Res. 2006. PMID: 17079440 Free article.

4

Integrated breast cancer genomics.

Edgren H, Kallioniemi O. Edgren H, et al. Among authors: kallioniemi o. Cancer Cell. 2006 Dec;10(6):453-4. doi: 10.1016/j.ccr.2006.11.007. Cancer Cell. 2006. PMID: 17157784 Free article.

5

KRAS oncogene rearrangements and gene fusions: unexpected rare encounters in late-stage prostate cancers.

Edgren H, Kangaspeska S, Kallioniemi O. Edgren H, et al. Among authors: kallioniemi o. Cancer Discov. 2011 Jun;1(1):12-3. doi: 10.1158/2159-8274.CD-11-0045. Epub 2011 Jun 1. Cancer Discov. 2011. PMID: 22586312

6

NMD microarray analysis for rapid genome-wide screen of mutated genes in cancer.

Wolf M, Edgren H, Muggerud A, Kilpinen S, Huusko P, Sørlie T, Mousses S, Kallioniemi O. Wolf M, et al. Among authors: kallioniemi o. Cell Oncol. 2005;27(3):169-73. doi: 10.1155/2005/478316. Cell Oncol. 2005. PMID: 16037637 Free PMC article. Review.

7

Integrative genomic, transcriptomic, and RNAi analysis indicates a potential oncogenic role for FAM110B in castration-resistant prostate cancer.

Vainio P, Wolf M, Edgren H, He T, Kohonen P, Mpindi JP, Smit F, Verhaegh G, Schalken J, Perälä M, Iljin K, Kallioniemi O. Vainio P, et al. Among authors: kallioniemi o. Prostate. 2012 May 15;72(7):789-802. doi: 10.1002/pros.21487. Epub 2011 Sep 14. Prostate. 2012. PMID: 21919029

8

Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms.

Kangaspeska S, Hultsch S, Edgren H, Nicorici D, Murumägi A, Kallioniemi O. Kangaspeska S, et al. Among authors: kallioniemi o. PLoS One. 2012;7(10):e48745. doi: 10.1371/journal.pone.0048745. Epub 2012 Oct 31. PLoS One. 2012. PMID: 23119097 Free PMC article.

9

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O. Hautaniemi S, et al. Among authors: kallioniemi o. Bioinformatics. 2003 Nov 1;19(16):2031-8. doi: 10.1093/bioinformatics/btg275. Bioinformatics. 2003. PMID: 14594707

10

Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2.

Rantala JK, Edgren H, Lehtinen L, Wolf M, Kleivi K, Vollan HK, Aaltola AR, Laasola P, Kilpinen S, Saviranta P, Iljin K, Kallioniemi O. Rantala JK, et al. Among authors: kallioniemi o. Neoplasia. 2010 Nov;12(11):877-88. doi: 10.1593/neo.10548. Neoplasia. 2010. PMID: 21082043 Free PMC article.

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