Hofacker IL - Search Results

1

RNA maps reveal new RNA classes and a possible function for pervasive transcription.

Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR. Kapranov P, et al. Among authors: hofacker il. Science. 2007 Jun 8;316(5830):1484-8. doi: 10.1126/science.1138341. Epub 2007 May 17. Science. 2007. PMID: 17510325

2

Automatic detection of conserved base pairing patterns in RNA virus genomes.

Hofacker IL, Stadler PF. Hofacker IL, et al. Comput Chem. 1999 Jun 15;23(3-4):401-14. doi: 10.1016/s0097-8485(99)00013-3. Comput Chem. 1999. PMID: 10404627

3

Prediction of RNA base pairing probabilities on massively parallel computers.

Fekete M, Hofacker IL, Stadler PF. Fekete M, et al. Among authors: hofacker il. J Comput Biol. 2000 Feb-Apr;7(1-2):171-82. doi: 10.1089/10665270050081441. J Comput Biol. 2000. PMID: 10890394

4

Design of multistable RNA molecules.

Flamm C, Hofacker IL, Maurer-Stroh S, Stadler PF, Zehl M. Flamm C, et al. Among authors: hofacker il. RNA. 2001 Feb;7(2):254-65. doi: 10.1017/s1355838201000863. RNA. 2001. PMID: 11233982 Free PMC article.

5

Conserved RNA secondary structures in Picornaviridae genomes.

Witwer C, Rauscher S, Hofacker IL, Stadler PF. Witwer C, et al. Among authors: hofacker il. Nucleic Acids Res. 2001 Dec 15;29(24):5079-89. doi: 10.1093/nar/29.24.5079. Nucleic Acids Res. 2001. PMID: 11812840 Free PMC article.

6

Secondary structure prediction for aligned RNA sequences.

Hofacker IL, Fekete M, Stadler PF. Hofacker IL, et al. J Mol Biol. 2002 Jun 21;319(5):1059-66. doi: 10.1016/S0022-2836(02)00308-X. J Mol Biol. 2002. PMID: 12079347

7

Stochastic pairwise alignments.

Mückstein U, Hofacker IL, Stadler PF. Mückstein U, et al. Among authors: hofacker il. Bioinformatics. 2002;18 Suppl 2:S153-60. doi: 10.1093/bioinformatics/18.suppl_2.s153. Bioinformatics. 2002. PMID: 12385998

8

On the evolution of primitive genetic codes.

Weberndorfer G, Hofacker IL, Stadler PF. Weberndorfer G, et al. Among authors: hofacker il. Orig Life Evol Biosph. 2003 Oct;33(4-5):491-514. doi: 10.1023/a:1025753712110. Orig Life Evol Biosph. 2003. PMID: 14604188

9

Prediction of locally stable RNA secondary structures for genome-wide surveys.

Hofacker IL, Priwitzer B, Stadler PF. Hofacker IL, et al. Bioinformatics. 2004 Jan 22;20(2):186-90. doi: 10.1093/bioinformatics/btg388. Bioinformatics. 2004. PMID: 14734309

10

Structural and evolutionary analysis of the transcribed sequence of Boudicca, a Schistosoma mansoni retrotransposon.

Copeland CS, Heyers O, Kalinna BH, Bachmair A, Stadler PF, Hofacker IL, Brindley PJ. Copeland CS, et al. Among authors: hofacker il. Gene. 2004 Mar 31;329:103-14. doi: 10.1016/j.gene.2003.12.023. Gene. 2004. PMID: 15033533

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