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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus.
BMC Genomics. 2007 Jun 15;8:174. doi: 10.1186/1471-2164-8-174.
BMC Genomics. 2007.
PMID: 17573971
Free PMC article.
Methods for obtaining and analyzing whole chloroplast genome sequences.
Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L.
Jansen RK, et al. Among authors: chumley tw.
Methods Enzymol. 2005;395:348-84. doi: 10.1016/S0076-6879(05)95020-9.
Methods Enzymol. 2005.
PMID: 15865976
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Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.
Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW.
Leebens-Mack J, et al. Among authors: chumley tw.
Mol Biol Evol. 2005 Oct;22(10):1948-63. doi: 10.1093/molbev/msi191. Epub 2005 Jun 8.
Mol Biol Evol. 2005.
PMID: 15944438
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The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants.
Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK.
Chumley TW, et al.
Mol Biol Evol. 2006 Nov;23(11):2175-90. doi: 10.1093/molbev/msl089. Epub 2006 Aug 17.
Mol Biol Evol. 2006.
PMID: 16916942
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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns.
Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee SB, Peery R, McNeal JR, Kuehl JV, Boore JL.
Jansen RK, et al. Among authors: chumley tw.
Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19369-74. doi: 10.1073/pnas.0709121104. Epub 2007 Nov 28.
Proc Natl Acad Sci U S A. 2007.
PMID: 18048330
Free PMC article.
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Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae.
Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK.
Guisinger MM, et al. Among authors: chumley tw.
J Mol Evol. 2010 Feb;70(2):149-66. doi: 10.1007/s00239-009-9317-3. Epub 2010 Jan 21.
J Mol Evol. 2010.
PMID: 20091301
Free PMC article.
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Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions.
Lee HL, Jansen RK, Chumley TW, Kim KJ.
Lee HL, et al. Among authors: chumley tw.
Mol Biol Evol. 2007 May;24(5):1161-80. doi: 10.1093/molbev/msm036. Epub 2007 Feb 28.
Mol Biol Evol. 2007.
PMID: 17329229
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