Jansen RK - Search Results

1

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus.

Raubeson LA, Peery R, Chumley TW, Dziubek C, Fourcade HM, Boore JL, Jansen RK. Raubeson LA, et al. Among authors: jansen rk. BMC Genomics. 2007 Jun 15;8:174. doi: 10.1186/1471-2164-8-174. BMC Genomics. 2007. PMID: 17573971 Free PMC article.

2

A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data.

Cosner ME, Jansen RK, Moret BM, Raubeson LA, Wang LS, Warnow T, Wyman S. Cosner ME, et al. Among authors: jansen rk. Proc Int Conf Intell Syst Mol Biol. 2000;8:104-15. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977071

3

Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study.

Wang LS, Jansen RK, Moret BM, Raubeson LA, Warnow T. Wang LS, et al. Among authors: jansen rk. Pac Symp Biocomput. 2002:524-35. Pac Symp Biocomput. 2002. PMID: 11928504 Free article.

4

Automatic annotation of organellar genomes with DOGMA.

Wyman SK, Jansen RK, Boore JL. Wyman SK, et al. Among authors: jansen rk. Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4. Bioinformatics. 2004. PMID: 15180927

5

Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes.

Cosner ME, Raubeson LA, Jansen RK. Cosner ME, et al. Among authors: jansen rk. BMC Evol Biol. 2004 Aug 23;4:27. doi: 10.1186/1471-2148-4-27. BMC Evol Biol. 2004. PMID: 15324459 Free PMC article.

6

Methods for obtaining and analyzing whole chloroplast genome sequences.

Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L. Jansen RK, et al. Methods Enzymol. 2005;395:348-84. doi: 10.1016/S0076-6879(05)95020-9. Methods Enzymol. 2005. PMID: 15865976

7

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW. Leebens-Mack J, et al. Among authors: jansen rk. Mol Biol Evol. 2005 Oct;22(10):1948-63. doi: 10.1093/molbev/msi191. Epub 2005 Jun 8. Mol Biol Evol. 2005. PMID: 15944438

8

The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.

Lee SB, Kaittanis C, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. Lee SB, et al. Among authors: jansen rk. BMC Genomics. 2006 Mar 23;7:61. doi: 10.1186/1471-2164-7-61. BMC Genomics. 2006. PMID: 16553962 Free PMC article.

9

The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants.

Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK. Chumley TW, et al. Among authors: jansen rk. Mol Biol Evol. 2006 Nov;23(11):2175-90. doi: 10.1093/molbev/msl089. Epub 2006 Aug 17. Mol Biol Evol. 2006. PMID: 16916942

10

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.

Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. Ruhlman T, et al. Among authors: jansen rk. BMC Genomics. 2006 Aug 31;7:222. doi: 10.1186/1471-2164-7-222. BMC Genomics. 2006. PMID: 16945140 Free PMC article.

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