Rätsch G - Search Results

1

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D. Clark RM, et al. Among authors: ratsch g. Science. 2007 Jul 20;317(5836):338-42. doi: 10.1126/science.1138632. Science. 2007. PMID: 17641193

2

Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays.

Zeller G, Clark RM, Schneeberger K, Bohlen A, Weigel D, Rätsch G. Zeller G, et al. Among authors: ratsch g. Genome Res. 2008 Jun;18(6):918-29. doi: 10.1101/gr.070169.107. Epub 2008 Mar 6. Genome Res. 2008. PMID: 18323538 Free PMC article.

3

Transcript normalization and segmentation of tiling array data.

Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G. Zeller G, et al. Among authors: ratsch g. Pac Symp Biocomput. 2008:527-38. Pac Symp Biocomput. 2008. PMID: 18229713 Free article.

4

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.

Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8795-800. doi: 10.1073/pnas.0802493105. Epub 2008 Jun 12. Proc Natl Acad Sci U S A. 2008. PMID: 18550839 Free PMC article.

5

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Genome Biol. 2008;9(7):R112. doi: 10.1186/gb-2008-9-7-r112. Epub 2008 Jul 9. Genome Biol. 2008. PMID: 18613972 Free PMC article.

6

Optimal spliced alignments of short sequence reads.

De Bona F, Ossowski S, Schneeberger K, Rätsch G. De Bona F, et al. Among authors: ratsch g. Bioinformatics. 2008 Aug 15;24(16):i174-80. doi: 10.1093/bioinformatics/btn300. Bioinformatics. 2008. PMID: 18689821 Free article.

7

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S. Zeller G, et al. Among authors: ratsch g. Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Plant J. 2009. PMID: 19222804 Free article.

8

Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17466-73. doi: 10.1073/pnas.1012891107. Epub 2010 Sep 24. Proc Natl Acad Sci U S A. 2010. PMID: 20870966 Free PMC article.

9

Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.

Eichner J, Zeller G, Laubinger S, Rätsch G. Eichner J, et al. Among authors: ratsch g. BMC Bioinformatics. 2011 Feb 16;12:55. doi: 10.1186/1471-2105-12-55. BMC Bioinformatics. 2011. PMID: 21324185 Free PMC article.

10

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.

Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, Rätsch G, Stegle O, Clark RM, Nordborg M. Dubin MJ, et al. Among authors: ratsch g. Elife. 2015 May 5;4:e05255. doi: 10.7554/eLife.05255. Elife. 2015. PMID: 25939354 Free PMC article.

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