Nielsen R - Search Results

1

Genome-wide patterns of nucleotide polymorphism in domesticated rice.

Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD. Caicedo AL, et al. Among authors: nielsen r. PLoS Genet. 2007 Sep;3(9):1745-56. doi: 10.1371/journal.pgen.0030163. Epub 2007 Aug 6. PLoS Genet. 2007. PMID: 17907810 Free PMC article.

2

A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents.

Bustamante CD, Nielsen R, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Mol Biol Evol. 2002 Jan;19(1):110-7. doi: 10.1093/oxfordjournals.molbev.a003975. Mol Biol Evol. 2002. PMID: 11752196

3

The cost of inbreeding in Arabidopsis.

Bustamante CD, Nielsen R, Sawyer SA, Olsen KM, Purugganan MD, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Nature. 2002 Apr 4;416(6880):531-4. doi: 10.1038/416531a. Nature. 2002. PMID: 11932744

4

Bayesian estimation of the number of inversions in the history of two chromosomes.

York TL, Durrett R, Nielsen R. York TL, et al. Among authors: nielsen r. J Comput Biol. 2002;9(6):805-18. doi: 10.1089/10665270260518281. J Comput Biol. 2002. PMID: 12614548

5

Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data.

Bustamante CD, Nielsen R, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Theor Popul Biol. 2003 Mar;63(2):91-103. doi: 10.1016/s0040-5809(02)00050-3. Theor Popul Biol. 2003. PMID: 12615493

6

Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome.

Clark AG, Nielsen R, Signorovitch J, Matise TC, Glanowski S, Heil J, Winn-Deen ES, Holden AL, Lai E. Clark AG, et al. Among authors: nielsen r. Am J Hum Genet. 2003 Aug;73(2):285-300. doi: 10.1086/377138. Epub 2003 Jul 3. Am J Hum Genet. 2003. PMID: 12844287 Free PMC article.

7

Bayesian estimation of genomic distance.

Durrett R, Nielsen R, York TL. Durrett R, et al. Among authors: nielsen r. Genetics. 2004 Jan;166(1):621-9. doi: 10.1534/genetics.166.1.621. Genetics. 2004. PMID: 15020449 Free PMC article.

8

Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.

Hey J, Nielsen R. Hey J, et al. Among authors: nielsen r. Genetics. 2004 Jun;167(2):747-60. doi: 10.1534/genetics.103.024182. Genetics. 2004. PMID: 15238526 Free PMC article.

9

Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.

Nielsen R, Hubisz MJ, Clark AG. Nielsen R, et al. Genetics. 2004 Dec;168(4):2373-82. doi: 10.1534/genetics.104.031039. Epub 2004 Sep 15. Genetics. 2004. PMID: 15371362 Free PMC article.

10

The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation.

Semon M, Nielsen R, Jones MP, McCouch SR. Semon M, et al. Among authors: nielsen r. Genetics. 2005 Mar;169(3):1639-47. doi: 10.1534/genetics.104.033175. Epub 2004 Nov 15. Genetics. 2005. PMID: 15545652 Free PMC article.

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