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TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors.
Nucleic Acids Res. 2008 Jan;36(Database issue):D125-31. doi: 10.1093/nar/gkm828. Epub 2007 Oct 18.
Nucleic Acids Res. 2008.
PMID: 17947326
Free PMC article.
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
Gao F, Foat BC, Bussemaker HJ.
Gao F, et al. Among authors: foat bc.
BMC Bioinformatics. 2004 Mar 18;5:31. doi: 10.1186/1471-2105-5-31.
BMC Bioinformatics. 2004.
PMID: 15113405
Free PMC article.
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T-profiler: scoring the activity of predefined groups of genes using gene expression data.
Boorsma A, Foat BC, Vis D, Klis F, Bussemaker HJ.
Boorsma A, et al. Among authors: foat bc.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W592-5. doi: 10.1093/nar/gki484.
Nucleic Acids Res. 2005.
PMID: 15980543
Free PMC article.
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Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.
Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ.
Foat BC, et al.
Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17675-80. doi: 10.1073/pnas.0503803102. Epub 2005 Nov 29.
Proc Natl Acad Sci U S A. 2005.
PMID: 16317069
Free PMC article.
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Identification of genes expressed in C. elegans touch receptor neurons.
Zhang Y, Ma C, Delohery T, Nasipak B, Foat BC, Bounoutas A, Bussemaker HJ, Kim SK, Chalfie M.
Zhang Y, et al. Among authors: foat bc.
Nature. 2002 Jul 18;418(6895):331-5. doi: 10.1038/nature00891.
Nature. 2002.
PMID: 12124626
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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
Foat BC, Morozov AV, Bussemaker HJ.
Foat BC, et al.
Bioinformatics. 2006 Jul 15;22(14):e141-9. doi: 10.1093/bioinformatics/btl223.
Bioinformatics. 2006.
PMID: 16873464
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Predictive modeling of genome-wide mRNA expression: from modules to molecules.
Bussemaker HJ, Foat BC, Ward LD.
Bussemaker HJ, et al. Among authors: foat bc.
Annu Rev Biophys Biomol Struct. 2007;36:329-47. doi: 10.1146/annurev.biophys.36.040306.132725.
Annu Rev Biophys Biomol Struct. 2007.
PMID: 17311525
Review.
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Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs.
Foat BC, Stormo GD.
Foat BC, et al.
Mol Syst Biol. 2009;5:268. doi: 10.1038/msb.2009.24. Epub 2009 Apr 28.
Mol Syst Biol. 2009.
PMID: 19401680
Free PMC article.
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