Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

346 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: bader gd. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Pathway information for systems biology.
Cary MP, Bader GD, Sander C. Cary MP, et al. Among authors: bader gd. FEBS Lett. 2005 Mar 21;579(8):1815-20. doi: 10.1016/j.febslet.2005.02.005. FEBS Lett. 2005. PMID: 15763557 Free article. Review.
Pathguide: a pathway resource list.
Bader GD, Cary MP, Sander C. Bader GD, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D504-6. doi: 10.1093/nar/gkj126. Nucleic Acids Res. 2006. PMID: 16381921 Free PMC article.
Cytoscape ESP: simple search of complex biological networks.
Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M, States DJ. Ashkenazi M, et al. Among authors: bader gd. Bioinformatics. 2008 Jun 15;24(12):1465-6. doi: 10.1093/bioinformatics/btn208. Epub 2008 Apr 28. Bioinformatics. 2008. PMID: 18445605 Free PMC article.
Exploring biological networks with Cytoscape software.
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Yeung N, et al. Among authors: bader gd. Curr Protoc Bioinformatics. 2008 Sep;Chapter 8:8.13.1-8.13.20. doi: 10.1002/0471250953.bi0813s23. Curr Protoc Bioinformatics. 2008. PMID: 18819078
Pathway Commons, a web resource for biological pathway data.
Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C. Cerami EG, et al. Among authors: bader gd. Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071392 Free PMC article.
346 results