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Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: sander c. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Pathway information for systems biology.
Cary MP, Bader GD, Sander C. Cary MP, et al. Among authors: sander c. FEBS Lett. 2005 Mar 21;579(8):1815-20. doi: 10.1016/j.febslet.2005.02.005. FEBS Lett. 2005. PMID: 15763557 Free article. Review.
Pathguide: a pathway resource list.
Bader GD, Cary MP, Sander C. Bader GD, et al. Among authors: sander c. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D504-6. doi: 10.1093/nar/gkj126. Nucleic Acids Res. 2006. PMID: 16381921 Free PMC article.
Integrated genomic analyses of ovarian carcinoma.
Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2011 Jun 29;474(7353):609-15. doi: 10.1038/nature10166. Nature. 2011. PMID: 21720365 Free PMC article.
The Cancer Genome Atlas Pan-Cancer analysis project.
Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Among authors: sander c. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.
A specificity map for the PDZ domain family.
Tonikian R, Zhang Y, Sazinsky SL, Currell B, Yeh JH, Reva B, Held HA, Appleton BA, Evangelista M, Wu Y, Xin X, Chan AC, Seshagiri S, Lasky LA, Sander C, Boone C, Bader GD, Sidhu SS. Tonikian R, et al. Among authors: sander c. PLoS Biol. 2008 Sep 30;6(9):e239. doi: 10.1371/journal.pbio.0060239. PLoS Biol. 2008. PMID: 18828675 Free PMC article.
1,263 results