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RSAT 2011: regulatory sequence analysis tools.
Thomas-Chollier M, Defrance M, Medina-Rivera A, Sand O, Herrmann C, Thieffry D, van Helden J. Thomas-Chollier M, et al. Among authors: van helden j. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W86-91. doi: 10.1093/nar/gkr377. Nucleic Acids Res. 2011. PMID: 21715389 Free PMC article.
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J; Harvard FlyBase curators; Berkeley Drosophila Genome Project; Hodges E, Hinrichs AS, Caspi A, Paten B, Park SW, Han MV, Maeder ML, Polansky BJ, Robson BE, Aerts S, van Helden J, Hassan B, Gilbert DG, Eastman DA, Rice M, Weir M, Hahn MW, Park Y, Dewey CN, Pachter L, Kent WJ, Haussler D, Lai EC, Bartel DP, Hannon GJ, Kaufman TC, Eisen MB, Clark AG, Smith D, Celniker SE, Gelbart WM, Kellis M. Stark A, et al. Among authors: van helden j. Nature. 2007 Nov 8;450(7167):219-32. doi: 10.1038/nature06340. Nature. 2007. PMID: 17994088 Free PMC article.
RSAT 2015: Regulatory Sequence Analysis Tools.
Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J. Medina-Rivera A, et al. Among authors: van helden j. Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22. Nucleic Acids Res. 2015. PMID: 25904632 Free PMC article.
Clusters of conserved beta cell marker genes for assessment of beta cell phenotype.
Martens GA, Jiang L, Hellemans KH, Stangé G, Heimberg H, Nielsen FC, Sand O, Van Helden J, Van Lommel L, Schuit F, Gorus FK, Pipeleers DG. Martens GA, et al. Among authors: van helden j, van lommel l. PLoS One. 2011;6(9):e24134. doi: 10.1371/journal.pone.0024134. Epub 2011 Sep 2. PLoS One. 2011. PMID: 21912665 Free PMC article.
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.
Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. Thomas-Chollier M, et al. Among authors: van helden j. Nucleic Acids Res. 2012 Feb;40(4):e31. doi: 10.1093/nar/gkr1104. Epub 2011 Dec 8. Nucleic Acids Res. 2012. PMID: 22156162 Free PMC article.
144 results