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ORegAnno: an open-access community-driven resource for regulatory annotation.
Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison R, Bergman CM, Jones SJ; Open Regulatory Annotation Consortium. Griffith OL, et al. Among authors: montgomery sb. Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13. doi: 10.1093/nar/gkm967. Epub 2007 Nov 15. Nucleic Acids Res. 2008. PMID: 18006570 Free PMC article.
The Genome sequence of the SARS-associated coronavirus.
Marra MA, Jones SJ, Astell CR, Holt RA, Brooks-Wilson A, Butterfield YS, Khattra J, Asano JK, Barber SA, Chan SY, Cloutier A, Coughlin SM, Freeman D, Girn N, Griffith OL, Leach SR, Mayo M, McDonald H, Montgomery SB, Pandoh PK, Petrescu AS, Robertson AG, Schein JE, Siddiqui A, Smailus DE, Stott JM, Yang GS, Plummer F, Andonov A, Artsob H, Bastien N, Bernard K, Booth TF, Bowness D, Czub M, Drebot M, Fernando L, Flick R, Garbutt M, Gray M, Grolla A, Jones S, Feldmann H, Meyers A, Kabani A, Li Y, Normand S, Stroher U, Tipples GA, Tyler S, Vogrig R, Ward D, Watson B, Brunham RC, Krajden M, Petric M, Skowronski DM, Upton C, Roper RL. Marra MA, et al. Among authors: montgomery sb. Science. 2003 May 30;300(5624):1399-404. doi: 10.1126/science.1085953. Epub 2003 May 1. Science. 2003. PMID: 12730501
Sockeye: a 3D environment for comparative genomics.
Montgomery SB, Astakhova T, Bilenky M, Birney E, Fu T, Hassel M, Melsopp C, Rak M, Robertson AG, Sleumer M, Siddiqui AS, Jones SJ. Montgomery SB, et al. Genome Res. 2004 May;14(5):956-62. doi: 10.1101/gr.1890304. Genome Res. 2004. PMID: 15123592 Free PMC article.
cisRED: a database system for genome-scale computational discovery of regulatory elements.
Robertson G, Bilenky M, Lin K, He A, Yuen W, Dagpinar M, Varhol R, Teague K, Griffith OL, Zhang X, Pan Y, Hassel M, Sleumer MC, Pan W, Pleasance ED, Chuang M, Hao H, Li YY, Robertson N, Fjell C, Li B, Montgomery SB, Astakhova T, Zhou J, Sander J, Siddiqui AS, Jones SJ. Robertson G, et al. Among authors: montgomery sb. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D68-73. doi: 10.1093/nar/gkj075. Nucleic Acids Res. 2006. PMID: 16381958 Free PMC article.
Text-mining assisted regulatory annotation.
Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM; Open Regulatory Annotation Consortium. Aerts S, et al. Among authors: montgomery sb. Genome Biol. 2008;9(2):R31. doi: 10.1186/gb-2008-9-2-r31. Epub 2008 Feb 13. Genome Biol. 2008. PMID: 18271954 Free PMC article.
Annotating the regulatory genome.
Montgomery SB, Kasaian K, Jones SJ, Griffith OL. Montgomery SB, et al. Methods Mol Biol. 2010;674:313-49. doi: 10.1007/978-1-60761-854-6_20. Methods Mol Biol. 2010. PMID: 20827601 Review.
ORegAnno 3.0: a community-driven resource for curated regulatory annotation.
Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL; Open Regulatory Annotation Consortium. Lesurf R, et al. Among authors: montgomery sb. Nucleic Acids Res. 2016 Jan 4;44(D1):D126-32. doi: 10.1093/nar/gkv1203. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578589 Free PMC article.
238 results