Engelen S - Search Results

1

Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.

Engelen S, Tahi F. Engelen S, et al. BMC Bioinformatics. 2007 Nov 28;8:464. doi: 10.1186/1471-2105-8-464. BMC Bioinformatics. 2007. PMID: 18045491 Free PMC article.

2

Tfold: efficient in silico prediction of non-coding RNA secondary structures.

Engelen S, Tahi F. Engelen S, et al. Nucleic Acids Res. 2010 Apr;38(7):2453-66. doi: 10.1093/nar/gkp1067. Epub 2010 Jan 4. Nucleic Acids Res. 2010. PMID: 20047957 Free PMC article.

3

TE-Tracker: systematic identification of transposition events through whole-genome resequencing.

Gilly A, Etcheverry M, Madoui MA, Guy J, Quadrana L, Alberti A, Martin A, Heitkam T, Engelen S, Labadie K, Le Pen J, Wincker P, Colot V, Aury JM. Gilly A, et al. Among authors: engelen s. BMC Bioinformatics. 2014 Nov 19;15(1):377. doi: 10.1186/s12859-014-0377-z. BMC Bioinformatics. 2014. PMID: 25408240 Free PMC article.

4

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments.

Bruno A, Aury JM, Engelen S. Bruno A, et al. Among authors: engelen s. BMC Bioinformatics. 2021 May 13;22(1):245. doi: 10.1186/s12859-021-04161-0. BMC Bioinformatics. 2021. PMID: 33985424 Free PMC article.

5

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.

Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. Engelen S, et al. PLoS Comput Biol. 2009 Jan;5(1):e1000267. doi: 10.1371/journal.pcbi.1000267. Epub 2009 Jan 23. PLoS Comput Biol. 2009. PMID: 19165315 Free PMC article.

6

Genome assembly using Nanopore-guided long and error-free DNA reads.

Madoui MA, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, Lemainque A, Wincker P, Aury JM. Madoui MA, et al. Among authors: engelen s. BMC Genomics. 2015 Apr 20;16(1):327. doi: 10.1186/s12864-015-1519-z. BMC Genomics. 2015. PMID: 25927464 Free PMC article.

7

Transposition favors the generation of large effect mutations that may facilitate rapid adaption.

Quadrana L, Etcheverry M, Gilly A, Caillieux E, Madoui MA, Guy J, Bortolini Silveira A, Engelen S, Baillet V, Wincker P, Aury JM, Colot V. Quadrana L, et al. Among authors: engelen s. Nat Commun. 2019 Jul 31;10(1):3421. doi: 10.1038/s41467-019-11385-5. Nat Commun. 2019. PMID: 31366887 Free PMC article.

8

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM. Istace B, et al. Among authors: engelen s. Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018. Gigascience. 2017. PMID: 28369459 Free PMC article.

9

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps.

Belser C, Istace B, Denis E, Dubarry M, Baurens FC, Falentin C, Genete M, Berrabah W, Chèvre AM, Delourme R, Deniot G, Denoeud F, Duffé P, Engelen S, Lemainque A, Manzanares-Dauleux M, Martin G, Morice J, Noel B, Vekemans X, D'Hont A, Rousseau-Gueutin M, Barbe V, Cruaud C, Wincker P, Aury JM. Belser C, et al. Among authors: engelen s. Nat Plants. 2018 Nov;4(11):879-887. doi: 10.1038/s41477-018-0289-4. Epub 2018 Nov 2. Nat Plants. 2018. PMID: 30390080

10

Long-read assembly of the Brassica napus reference genome Darmor-bzh.

Rousseau-Gueutin M, Belser C, Da Silva C, Richard G, Istace B, Cruaud C, Falentin C, Boideau F, Boutte J, Delourme R, Deniot G, Engelen S, de Carvalho JF, Lemainque A, Maillet L, Morice J, Wincker P, Denoeud F, Chèvre AM, Aury JM. Rousseau-Gueutin M, et al. Among authors: engelen s. Gigascience. 2020 Dec 15;9(12):giaa137. doi: 10.1093/gigascience/giaa137. Gigascience. 2020. PMID: 33319912 Free PMC article.

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