Rotkiewicz P - Search Results

1

Fast procedure for reconstruction of full-atom protein models from reduced representations.

Rotkiewicz P, Skolnick J. Rotkiewicz P, et al. J Comput Chem. 2008 Jul 15;29(9):1460-5. doi: 10.1002/jcc.20906. J Comput Chem. 2008. PMID: 18196502 Free PMC article.

2

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models.

Feig M, Rotkiewicz P, Kolinski A, Skolnick J, Brooks CL 3rd. Feig M, et al. Among authors: rotkiewicz p. Proteins. 2000 Oct 1;41(1):86-97. doi: 10.1002/1097-0134(20001001)41:1<86::aid-prot110>3.0.co;2-y. Proteins. 2000. PMID: 10944396

3

Protein fragment reconstruction using various modeling techniques.

Boniecki M, Rotkiewicz P, Skolnick J, Kolinski A. Boniecki M, et al. Among authors: rotkiewicz p. J Comput Aided Mol Des. 2003 Nov;17(11):725-38. doi: 10.1023/b:jcam.0000017486.83645.a0. J Comput Aided Mol Des. 2003. PMID: 15072433

4

Ab initio folding of proteins using restraints derived from evolutionary information.

Ortiz AR, Kolinski A, Rotkiewicz P, Ilkowski B, Skolnick J. Ortiz AR, et al. Among authors: rotkiewicz p. Proteins. 1999;Suppl 3:177-85. doi: 10.1002/(sici)1097-0134(1999)37:3+<177::aid-prot22>3.3.co;2-5. Proteins. 1999. PMID: 10526366

5

A method for the improvement of threading-based protein models.

Kolinski A, Rotkiewicz P, Ilkowski B, Skolnick J. Kolinski A, et al. Among authors: rotkiewicz p. Proteins. 1999 Dec 1;37(4):592-610. doi: 10.1002/(sici)1097-0134(19991201)37:4<592::aid-prot10>3.0.co;2-2. Proteins. 1999. PMID: 10651275

6

Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.

Kolinski A, Betancourt MR, Kihara D, Rotkiewicz P, Skolnick J. Kolinski A, et al. Among authors: rotkiewicz p. Proteins. 2001 Aug 1;44(2):133-49. doi: 10.1002/prot.1080. Proteins. 2001. PMID: 11391776

7

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement.

Skolnick J, Kolinski A, Kihara D, Betancourt M, Rotkiewicz P, Boniecki M. Skolnick J, et al. Among authors: rotkiewicz p. Proteins. 2001;Suppl 5:149-56. doi: 10.1002/prot.1172. Proteins. 2001. PMID: 11835492

8

PDBFlex: exploring flexibility in protein structures.

Hrabe T, Li Z, Sedova M, Rotkiewicz P, Jaroszewski L, Godzik A. Hrabe T, et al. Among authors: rotkiewicz p. Nucleic Acids Res. 2016 Jan 4;44(D1):D423-8. doi: 10.1093/nar/gkv1316. Epub 2015 Nov 28. Nucleic Acids Res. 2016. PMID: 26615193 Free PMC article.

9

Structural and functional analysis of the globular head domain of p115 provides insight into membrane tethering.

An Y, Chen CY, Moyer B, Rotkiewicz P, Elsliger MA, Godzik A, Wilson IA, Balch WE. An Y, et al. Among authors: rotkiewicz p. J Mol Biol. 2009 Aug 7;391(1):26-41. doi: 10.1016/j.jmb.2009.04.062. Epub 2009 May 4. J Mol Biol. 2009. PMID: 19414022 Free PMC article.

10

Model of three-dimensional structure of vitamin D receptor and its binding mechanism with 1alpha,25-dihydroxyvitamin D(3).

Rotkiewicz P, Sicinska W, Kolinski A, DeLuca HF. Rotkiewicz P, et al. Proteins. 2001 Aug 15;44(3):188-99. doi: 10.1002/prot.1084. Proteins. 2001. PMID: 11455592

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