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Text-mining assisted regulatory annotation.
Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM; Open Regulatory Annotation Consortium. Aerts S, et al. Genome Biol. 2008;9(2):R31. doi: 10.1186/gb-2008-9-2-r31. Epub 2008 Feb 13. Genome Biol. 2008. PMID: 18271954 Free PMC article.
Computational detection of cis -regulatory modules.
Aerts S, Van Loo P, Thijs G, Moreau Y, De Moor B. Aerts S, et al. Bioinformatics. 2003 Oct;19 Suppl 2:ii5-14. doi: 10.1093/bioinformatics/btg1052. Bioinformatics. 2003. PMID: 14534164
ORegAnno: an open-access community-driven resource for regulatory annotation.
Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison R, Bergman CM, Jones SJ; Open Regulatory Annotation Consortium. Griffith OL, et al. Among authors: aerts s. Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13. doi: 10.1093/nar/gkm967. Epub 2007 Nov 15. Nucleic Acids Res. 2008. PMID: 18006570 Free PMC article.
ENDEAVOUR update: a web resource for gene prioritization in multiple species.
Tranchevent LC, Barriot R, Yu S, Van Vooren S, Van Loo P, Coessens B, De Moor B, Aerts S, Moreau Y. Tranchevent LC, et al. Among authors: aerts s. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W377-84. doi: 10.1093/nar/gkn325. Epub 2008 May 28. Nucleic Acids Res. 2008. PMID: 18508807 Free PMC article.
Sequencing the regulatory genome.
Aerts S, Butland S. Aerts S, et al. Genome Biol. 2008;9(6):313. doi: 10.1186/gb-2008-9-6-313. Epub 2008 Jun 19. Genome Biol. 2008. PMID: 18598374 Free PMC article.
iRegulon: from a gene list to a gene regulatory network using large motif and track collections.
Janky R, Verfaillie A, Imrichová H, Van de Sande B, Standaert L, Christiaens V, Hulselmans G, Herten K, Naval Sanchez M, Potier D, Svetlichnyy D, Kalender Atak Z, Fiers M, Marine JC, Aerts S. Janky R, et al. Among authors: aerts s. PLoS Comput Biol. 2014 Jul 24;10(7):e1003731. doi: 10.1371/journal.pcbi.1003731. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25058159 Free PMC article.
174 results