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Text-mining assisted regulatory annotation.
Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM; Open Regulatory Annotation Consortium. Aerts S, et al. Among authors: bergman cm. Genome Biol. 2008;9(2):R31. doi: 10.1186/gb-2008-9-2-r31. Epub 2008 Feb 13. Genome Biol. 2008. PMID: 18271954 Free PMC article.
ORegAnno: an open-access community-driven resource for regulatory annotation.
Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison R, Bergman CM, Jones SJ; Open Regulatory Annotation Consortium. Griffith OL, et al. Among authors: bergman cm. Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13. doi: 10.1093/nar/gkm967. Epub 2007 Nov 15. Nucleic Acids Res. 2008. PMID: 18006570 Free PMC article.
The GNAT library for local and remote gene mention normalization.
Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM. Hakenberg J, et al. Among authors: bergman cm. Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3. Bioinformatics. 2011. PMID: 21813477 Free PMC article.
Text mining for biology--the way forward: opinions from leading scientists.
Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O'Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A. Altman RB, et al. Among authors: bergman cm. Genome Biol. 2008;9 Suppl 2(Suppl 2):S7. doi: 10.1186/gb-2008-9-s2-s7. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834498 Free PMC article.
90 results