Thompson RF - Search Results

1

An integrative genomic and epigenomic approach for the study of transcriptional regulation.

Figueroa ME, Reimers M, Thompson RF, Ye K, Li Y, Selzer RR, Fridriksson J, Paietta E, Wiernik P, Green RD, Greally JM, Melnick A. Figueroa ME, et al. Among authors: thompson rf. PLoS One. 2008 Mar 26;3(3):e1882. doi: 10.1371/journal.pone.0001882. PLoS One. 2008. PMID: 18365023 Free PMC article.

2

Experimental approaches to the study of epigenomic dysregulation in ageing.

Thompson RF, Fazzari MJ, Greally JM. Thompson RF, et al. Exp Gerontol. 2010 Apr;45(4):255-68. doi: 10.1016/j.exger.2009.12.013. Epub 2010 Jan 10. Exp Gerontol. 2010. PMID: 20060885 Free PMC article. Review.

3

Comparative isoschizomer profiling of cytosine methylation: the HELP assay.

Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, Stasiek E, Figueroa ME, Glass JL, Chen Q, Montagna C, Hatchwell E, Selzer RR, Richmond TA, Green RD, Melnick A, Greally JM. Khulan B, et al. Among authors: thompson rf. Genome Res. 2006 Aug;16(8):1046-55. doi: 10.1101/gr.5273806. Epub 2006 Jun 29. Genome Res. 2006. PMID: 16809668 Free PMC article.

4

An analytical pipeline for genomic representations used for cytosine methylation studies.

Thompson RF, Reimers M, Khulan B, Gissot M, Richmond TA, Chen Q, Zheng X, Kim K, Greally JM. Thompson RF, et al. Bioinformatics. 2008 May 1;24(9):1161-7. doi: 10.1093/bioinformatics/btn096. Epub 2008 Mar 18. Bioinformatics. 2008. PMID: 18353789 Free PMC article.

5

High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.

Oda M, Glass JL, Thompson RF, Mo Y, Olivier EN, Figueroa ME, Selzer RR, Richmond TA, Zhang X, Dannenberg L, Green RD, Melnick A, Hatchwell E, Bouhassira EE, Verma A, Suzuki M, Greally JM. Oda M, et al. Among authors: thompson rf. Nucleic Acids Res. 2009 Jul;37(12):3829-39. doi: 10.1093/nar/gkp260. Epub 2009 Apr 22. Nucleic Acids Res. 2009. PMID: 19386619 Free PMC article.

6

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.

Thompson RF, Suzuki M, Lau KW, Greally JM. Thompson RF, et al. Bioinformatics. 2009 Sep 1;25(17):2164-70. doi: 10.1093/bioinformatics/btp382. Epub 2009 Jun 26. Bioinformatics. 2009. PMID: 19561019 Free PMC article.

7

Cytosine methylation dysregulation in neonates following intrauterine growth restriction.

Einstein F, Thompson RF, Bhagat TD, Fazzari MJ, Verma A, Barzilai N, Greally JM. Einstein F, et al. Among authors: thompson rf. PLoS One. 2010 Jan 26;5(1):e8887. doi: 10.1371/journal.pone.0008887. PLoS One. 2010. PMID: 20126273 Free PMC article.

8

Experimental intrauterine growth restriction induces alterations in DNA methylation and gene expression in pancreatic islets of rats.

Thompson RF, Fazzari MJ, Niu H, Barzilai N, Simmons RA, Greally JM. Thompson RF, et al. J Biol Chem. 2010 May 14;285(20):15111-15118. doi: 10.1074/jbc.M109.095133. Epub 2010 Mar 1. J Biol Chem. 2010. PMID: 20194508 Free PMC article.

9

DNA methylation changes in murine breast adenocarcinomas allow the identification of candidate genes for human breast carcinogenesis.

Acosta D, Suzuki M, Connolly D, Thompson RF, Fazzari MJ, Greally JM, Montagna C. Acosta D, et al. Among authors: thompson rf. Mamm Genome. 2011 Apr;22(3-4):249-59. doi: 10.1007/s00335-011-9318-6. Epub 2011 Mar 4. Mamm Genome. 2011. PMID: 21373886

10

CG dinucleotide clustering is a species-specific property of the genome.

Glass JL, Thompson RF, Khulan B, Figueroa ME, Olivier EN, Oakley EJ, Van Zant G, Bouhassira EE, Melnick A, Golden A, Fazzari MJ, Greally JM. Glass JL, et al. Among authors: thompson rf. Nucleic Acids Res. 2007;35(20):6798-807. doi: 10.1093/nar/gkm489. Epub 2007 Oct 10. Nucleic Acids Res. 2007. PMID: 17932072 Free PMC article.

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