Eisen MB - Search Results

1

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Among authors: eisen mb. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.

2

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB. Berman BP, et al. Among authors: eisen mb. Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62. doi: 10.1073/pnas.231608898. Proc Natl Acad Sci U S A. 2002. PMID: 11805330 Free PMC article.

3

Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.

Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB. Chiang DY, et al. Among authors: eisen mb. Genome Biol. 2003;4(7):R43. doi: 10.1186/gb-2003-4-7-r43. Epub 2003 Jun 26. Genome Biol. 2003. PMID: 12844359 Free PMC article.

4

Benchmarking tools for the alignment of functional noncoding DNA.

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2004 Jan 21;5:6. doi: 10.1186/1471-2105-5-6. BMC Bioinformatics. 2004. PMID: 14736341 Free PMC article.

5

Correction: Benchmarking tools for the alignment of functional noncoding DNA.

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2004 Jun 8;5:73. doi: 10.1186/1471-2105-5-73. BMC Bioinformatics. 2004. PMID: 15186509 Free PMC article. No abstract available.

6

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE. Berman BP, et al. Among authors: eisen mb. Genome Biol. 2004;5(9):R61. doi: 10.1186/gb-2004-5-9-r61. Epub 2004 Aug 20. Genome Biol. 2004. PMID: 15345045 Free PMC article.

7

Large-scale turnover of functional transcription factor binding sites in Drosophila.

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY, Biggin MD, Eisen MB. Moses AM, et al. Among authors: eisen mb. PLoS Comput Biol. 2006 Oct;2(10):e130. doi: 10.1371/journal.pcbi.0020130. Epub 2006 Aug 21. PLoS Comput Biol. 2006. PMID: 17040121 Free PMC article.

8

Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.

Pollard DA, Iyer VN, Moses AM, Eisen MB. Pollard DA, et al. Among authors: eisen mb. PLoS Genet. 2006 Oct 27;2(10):e173. doi: 10.1371/journal.pgen.0020173. Epub 2006 Aug 28. PLoS Genet. 2006. PMID: 17132051 Free PMC article.

9

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.

Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Luengo Hendriks CL, et al. Among authors: eisen mb. Genome Biol. 2006;7(12):R123. doi: 10.1186/gb-2006-7-12-r123. Genome Biol. 2006. PMID: 17184546 Free PMC article.

10

Automatic image analysis for gene expression patterns of fly embryos.

Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW. Peng H, et al. Among authors: eisen mb. BMC Cell Biol. 2007 Jul 10;8 Suppl 1(Suppl 1):S7. doi: 10.1186/1471-2121-8-S1-S7. BMC Cell Biol. 2007. PMID: 17634097 Free PMC article.

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