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Page 1
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes.
Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, Shidlovskiy F, Tikhonov A, Willerslev E, Iacumin P, Buigues B, Ericson PG, Germonpré M, Kosintsev P, Nikolaev V, Nowak-Kemp M, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC. Gilbert MT, et al. Among authors: ratan a. Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8327-32. doi: 10.1073/pnas.0802315105. Epub 2008 Jun 9. Proc Natl Acad Sci U S A. 2008. PMID: 18541911 Free PMC article.
The infinite sites model of genome evolution.
Ma J, Ratan A, Raney BJ, Suh BB, Miller W, Haussler D. Ma J, et al. Among authors: ratan a. Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14254-61. doi: 10.1073/pnas.0805217105. Epub 2008 Sep 11. Proc Natl Acad Sci U S A. 2008. PMID: 18787111 Free PMC article.
Sequencing the nuclear genome of the extinct woolly mammoth.
Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, Tomsho LP, Packard MD, Zhao F, Sher A, Tikhonov A, Raney B, Patterson N, Lindblad-Toh K, Lander ES, Knight JR, Irzyk GP, Fredrikson KM, Harkins TT, Sheridan S, Pringle T, Schuster SC. Miller W, et al. Among authors: ratan a. Nature. 2008 Nov 20;456(7220):387-90. doi: 10.1038/nature07446. Nature. 2008. PMID: 19020620
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).
Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, Tomsho LP, Packard M, Zhang Y, McClellan LR, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson PG, Huson DH, Helgen KM, Murphy WJ, Götherström A, Schuster SC. Miller W, et al. Among authors: ratan a. Genome Res. 2009 Feb;19(2):213-20. doi: 10.1101/gr.082628.108. Epub 2009 Jan 12. Genome Res. 2009. PMID: 19139089 Free PMC article.
Complete Khoisan and Bantu genomes from southern Africa.
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, Muzny DM, Reid JG, Nazareth LV, Wang Q, Burhans R, Riemer C, Wittekindt NE, Moorjani P, Tindall EA, Danko CG, Teo WS, Buboltz AM, Zhang Z, Ma Q, Oosthuysen A, Steenkamp AW, Oostuisen H, Venter P, Gajewski J, Zhang Y, Pugh BF, Makova KD, Nekrutenko A, Mardis ER, Patterson N, Pringle TH, Chiaromonte F, Mullikin JC, Eichler EE, Hardison RC, Gibbs RA, Harkins TT, Hayes VM. Schuster SC, et al. Among authors: ratan a. Nature. 2010 Feb 18;463(7283):943-7. doi: 10.1038/nature08795. Nature. 2010. PMID: 20164927 Free PMC article.
Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear.
Lindqvist C, Schuster SC, Sun Y, Talbot SL, Qi J, Ratan A, Tomsho LP, Kasson L, Zeyl E, Aars J, Miller W, Ingólfsson O, Bachmann L, Wiig O. Lindqvist C, et al. Among authors: ratan a. Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5053-7. doi: 10.1073/pnas.0914266107. Epub 2010 Mar 1. Proc Natl Acad Sci U S A. 2010. PMID: 20194737 Free PMC article.
Calling SNPs without a reference sequence.
Ratan A, Zhang Y, Hayes VM, Schuster SC, Miller W. Ratan A, et al. BMC Bioinformatics. 2010 Mar 15;11:130. doi: 10.1186/1471-2105-11-130. BMC Bioinformatics. 2010. PMID: 20230626 Free PMC article.
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil).
Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, Hardie RA, Woodbridge P, Tindall EA, Bertelsen MF, Dixon D, Pyecroft S, Helgen KM, Lesk AM, Pringle TH, Patterson N, Zhang Y, Kreiss A, Woods GM, Jones ME, Schuster SC. Miller W, et al. Among authors: ratan a. Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12348-53. doi: 10.1073/pnas.1102838108. Epub 2011 Jun 27. Proc Natl Acad Sci U S A. 2011. PMID: 21709235 Free PMC article.
120 results