Bainbridge M - Search Results

1

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.

Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra M. Morin R, et al. Among authors: bainbridge m. Biotechniques. 2008 Jul;45(1):81-94. doi: 10.2144/000112900. Biotechniques. 2008. PMID: 18611170 Free article.

2

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology.

Fejes AP, Robertson G, Bilenky M, Varhol R, Bainbridge M, Jones SJ. Fejes AP, et al. Among authors: bainbridge m. Bioinformatics. 2008 Aug 1;24(15):1729-30. doi: 10.1093/bioinformatics/btn305. Epub 2008 Jul 3. Bioinformatics. 2008. PMID: 18599518 Free PMC article.

3

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ. Bainbridge MN, et al. BMC Genomics. 2006 Sep 29;7:246. doi: 10.1186/1471-2164-7-246. BMC Genomics. 2006. PMID: 17010196 Free PMC article.

4

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S. Robertson G, et al. Among authors: bainbridge m. Nat Methods. 2007 Aug;4(8):651-7. doi: 10.1038/nmeth1068. Epub 2007 Jun 11. Nat Methods. 2007. PMID: 17558387

5

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ. Shin H, et al. Among authors: bainbridge mn. BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30. BMC Biol. 2008. PMID: 18611272 Free PMC article.

6

THOR: targeted high-throughput ortholog reconstructor.

Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. Bainbridge MN, et al. Bioinformatics. 2007 Oct 1;23(19):2622-4. doi: 10.1093/bioinformatics/btl513. Epub 2006 Oct 11. Bioinformatics. 2007. PMID: 17038343

7

Comprehensive molecular characterization of human colon and rectal cancer.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. Nature. 2012. PMID: 22810696 Free PMC article.

8

Whole exome capture in solution with 3 Gbp of data.

Bainbridge MN, Wang M, Burgess DL, Kovar C, Rodesch MJ, D'Ascenzo M, Kitzman J, Wu YQ, Newsham I, Richmond TA, Jeddeloh JA, Muzny D, Albert TJ, Gibbs RA. Bainbridge MN, et al. Genome Biol. 2010;11(6):R62. doi: 10.1186/gb-2010-11-6-r62. Epub 2010 Jun 17. Genome Biol. 2010. PMID: 20565776 Free PMC article.

9

Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities.

Bainbridge MN, Wang M, Wu Y, Newsham I, Muzny DM, Jefferies JL, Albert TJ, Burgess DL, Gibbs RA. Bainbridge MN, et al. Genome Biol. 2011 Jul 25;12(7):R68. doi: 10.1186/gb-2011-12-7-r68. Genome Biol. 2011. PMID: 21787409 Free PMC article.

10

The functional spectrum of low-frequency coding variation.

Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, Chen Y, Challis D, Clarke L, Ball EV, Cibulskis K, Cooper DN, Fulton B, Hartl C, Koboldt D, Muzny D, Smith R, Sougnez C, Stewart C, Ward A, Yu J, Xue Y, Altshuler D, Bustamante CD, Clark AG, Daly M, DePristo M, Flicek P, Gabriel S, Mardis E, Palotie A, Gibbs R; 1000 Genomes Project. Marth GT, et al. Among authors: bainbridge m. Genome Biol. 2011 Sep 14;12(9):R84. doi: 10.1186/gb-2011-12-9-r84. Genome Biol. 2011. PMID: 21917140 Free PMC article.

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