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The genome of the simian and human malaria parasite Plasmodium knowlesi.
Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, Meyer IM, Ormond D, Peters N, Sanders M, Sanders S, Sargeant TJ, Simmonds M, Smith F, Squares R, Thurston S, Tivey AR, Walker D, White B, Zuiderwijk E, Churcher C, Quail MA, Cowman AF, Turner CM, Rajandream MA, Kocken CH, Thomas AW, Newbold CI, Barrell BG, Berriman M. Pain A, et al. Among authors: borgwardt k. Nature. 2008 Oct 9;455(7214):799-803. doi: 10.1038/nature07306. Nature. 2008. PMID: 18843368 Free PMC article.
Prediction of human population responses to toxic compounds by a collaborative competition.
Eduati F, Mangravite LM, Wang T, Tang H, Bare JC, Huang R, Norman T, Kellen M, Menden MP, Yang J, Zhan X, Zhong R, Xiao G, Xia M, Abdo N, Kosyk O; NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration; Friend S, Dearry A, Simeonov A, Tice RR, Rusyn I, Wright FA, Stolovitzky G, Xie Y, Saez-Rodriguez J. Eduati F, et al. Nat Biotechnol. 2015 Sep;33(9):933-40. doi: 10.1038/nbt.3299. Epub 2015 Aug 10. Nat Biotechnol. 2015. PMID: 26258538 Free PMC article.
Whole-genome sequencing of multiple Arabidopsis thaliana populations.
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D. Cao J, et al. Among authors: borgwardt k. Nat Genet. 2011 Aug 28;43(10):956-63. doi: 10.1038/ng.911. Nat Genet. 2011. PMID: 21874002
Accurate indel prediction using paired-end short reads.
Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K. Grimm D, et al. Among authors: borgwardt k. BMC Genomics. 2013 Feb 27;14:132. doi: 10.1186/1471-2164-14-132. BMC Genomics. 2013. PMID: 23442375 Free PMC article.
Methods and Tools in Genome-wide Association Studies.
Gumpinger AC, Roqueiro D, Grimm DG, Borgwardt KM. Gumpinger AC, et al. Methods Mol Biol. 2018;1819:93-136. doi: 10.1007/978-1-4939-8618-7_5. Methods Mol Biol. 2018. PMID: 30421401
GLIDE: GPU-based linear regression for detection of epistasis.
Kam-Thong T, Azencott CA, Cayton L, Pütz B, Altmann A, Karbalai N, Sämann PG, Schölkopf B, Müller-Myhsok B, Borgwardt KM. Kam-Thong T, et al. Hum Hered. 2012;73(4):220-36. doi: 10.1159/000341885. Epub 2012 Sep 4. Hum Hered. 2012. PMID: 22965145 Free article.
AraPheno: a public database for Arabidopsis thaliana phenotypes.
Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. Seren Ü, et al. Among authors: borgwardt k. Nucleic Acids Res. 2017 Jan 4;45(D1):D1054-D1059. doi: 10.1093/nar/gkw986. Epub 2016 Oct 24. Nucleic Acids Res. 2017. PMID: 27924043 Free PMC article.
74 results