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BASH: a tool for managing BeadArray spatial artefacts.
Cairns JM, Dunning MJ, Ritchie ME, Russell R, Lynch AG. Cairns JM, et al. Among authors: ritchie me. Bioinformatics. 2008 Dec 15;24(24):2921-2. doi: 10.1093/bioinformatics/btn557. Epub 2008 Oct 25. Bioinformatics. 2008. PMID: 18953044 Free PMC article.
Statistical issues in the analysis of Illumina data.
Dunning MJ, Barbosa-Morais NL, Lynch AG, Tavaré S, Ritchie ME. Dunning MJ, et al. Among authors: ritchie me. BMC Bioinformatics. 2008 Feb 6;9:85. doi: 10.1186/1471-2105-9-85. BMC Bioinformatics. 2008. PMID: 18254947 Free PMC article.
beadarray: R classes and methods for Illumina bead-based data.
Dunning MJ, Smith ML, Ritchie ME, Tavaré S. Dunning MJ, et al. Among authors: ritchie me. Bioinformatics. 2007 Aug 15;23(16):2183-4. doi: 10.1093/bioinformatics/btm311. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586828
BeadArray expression analysis using bioconductor.
Ritchie ME, Dunning MJ, Smith ML, Shi W, Lynch AG. Ritchie ME, et al. PLoS Comput Biol. 2011 Dec;7(12):e1002276. doi: 10.1371/journal.pcbi.1002276. Epub 2011 Dec 1. PLoS Comput Biol. 2011. PMID: 22144879 Free PMC article.
Illumina WG-6 BeadChip strips should be normalized separately.
Shi W, Banerjee A, Ritchie ME, Gerondakis S, Smyth GK. Shi W, et al. Among authors: ritchie me. BMC Bioinformatics. 2009 Nov 11;10:372. doi: 10.1186/1471-2105-10-372. BMC Bioinformatics. 2009. PMID: 19903361 Free PMC article.
173 results